PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold09489-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 168aa    MW: 19200.2 Da    PI: 9.6446
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold09489-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-1534121496
                                                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-T CS
                                                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltk 63 
                                                       vl +s+v  + ++ +p k     ++++ + +  t+ + +g+ We+ +  ++ +++   + +
  snap_masked-scaffold09489-abinit-gene-0.6-mRNA-1  34 VLAKSHVKPLYQMGVPAKLH---SIIP-SLVVPTVLTYWGKNWEMSC--NGAQRThKKFDS 88 
                                                       55566666666666665554...2222.3345578899*********..6666665789** PP

                                                       THHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                                                B3  64 GWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                                       GW+ F ++n+Lk+gD +vF+l++rs+++lv++v
  snap_masked-scaffold09489-abinit-gene-0.6-mRNA-1  89 GWRAFINDNNLKAGDACVFELIERSSKKLVFRV 121
                                                       **********************99999898876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1627125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-1627124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-1629125No hitNo description
SMARTSM010194.5E-731127IPR003340B3 DNA binding domain
PfamPF023621.6E-1333121IPR003340B3 DNA binding domain
PROSITE profilePS5086311.57569127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEYPQAQTGQ VPMETNLQEN QHWPLSGKPY FDVVLAKSHV KPLYQMGVPA KLHSIIPSLV  60
VPTVLTYWGK NWEMSCNGAQ RTHKKFDSGW RAFINDNNLK AGDACVFELI ERSSKKLVFR  120
VQILRGDIPP EFQGKIDSKK LTSVRSFVNI TSHDLLYWDM HGAIIMVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910046.13e-61B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2P6RZ463e-53A0A2P6RZ46_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004303740.11e-49(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-09B3 family protein