PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 151aa    MW: 17135 Da    PI: 9.485
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.3e-2055146598
                                                       -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE- CS
                                                B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvlt 62 
                                                        +p+++lk++ +++  +fa+++  g     +k ++l+ +sg+ W  ++++++   +  +++
  snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1  55 VIPAYSLKRNFVYVCPEFAKKYacG-----EKNVKLQASSGKWWPCQFCFKNDTTSpKTIG 110
                                                       5799******************543.....246*****************888888899** PP

                                                       TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                                B3  63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                       kGWk F+++ng+kegD++vF+l++r++  l+v+++r
  snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1 111 KGWKPFARDNGIKEGDVCVFELINRMDVVLKVSIYR 146
                                                       *************************99999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2044146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-1945146IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-1750146No hitNo description
PROSITE profilePS5086311.98451148IPR003340B3 DNA binding domain
SMARTSM010191.1E-1152148IPR003340B3 DNA binding domain
PfamPF023628.1E-1854146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSTPQELCVK EEVDTELIVI ENLPMSRRSV LSGGGERALQ AARMFKPKNP SFIRVIPAYS  60
LKRNFVYVCP EFAKKYACGE KNVKLQASSG KWWPCQFCFK NDTTSPKTIG KGWKPFARDN  120
GIKEGDVCVF ELINRMDVVL KVSIYRVAEY A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-202115018145B3 domain-containing transcription factor VRN1
4i1k_B5e-202115018145B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895233.16e-94B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9G2Y21e-34A0A2N9G2Y2_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-21related to vernalization1 1