PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 309aa MW: 34924.3 Da PI: 6.6505

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.2	6e-32	96	200	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEET CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkks 56 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1 96 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSS 155 89*************************966778999****************** PP TEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 57 gryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 ++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l++ ++r+ snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1 156 QSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGKDRLFIDWRRR 200 *************************666999999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.1E-42	90	203	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.02E-29	93	200	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.41E-26	94	183	No hit	No description
PROSITE profile	PS50863	14.649	96	201	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-22	96	201	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-29	96	200	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDFGAHREGF CEEAEHMVMM RGKPPFSYSS SSSHDASDVK QQLEFMESSP RNEDDLDDVR 60 QNGLAPTGAV TGSGITSGTS SSTGMMMMMM EREHMFDKVV TPSDVGKLNR LVIPKQHAEK 120 YFPLDSSTNE KGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS 180 FQRGVGELGK DRLFIDWRRR PDAPDPNLSL PLPLHHHHQF ASYHHQAWSP LLMRPPPRDR 240 CPISETDECD ILSSTTIAHT SMPSQPSTLL SSSSQSPLQL RLYNGTPLPT VPTDFLNKGK 300 ASMSFDFDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-68	89	201	1	114	B3 domain-containing transcription factor NGA1
5os9_B	4e-68	89	201	1	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023918802.1	1e-135	B3 domain-containing protein Os03g0120900-like
Refseq	XP_023927962.1	1e-135	B3 domain-containing protein Os03g0120900-like
Refseq	XP_023927964.1	1e-135	B3 domain-containing protein Os03g0120900-like
TrEMBL	A0A2N9I937	1e-119	A0A2N9I937_FAGSY; Uncharacterized protein
STRING	Gorai.008G261100.1	5e-85	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2338	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	2e-66	B3 family protein