PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 338aa    MW: 38507.8 Da    PI: 5.3184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.1e-1015713694
                                                       EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                                                 B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                                                        +++ ++gr+W++ l  +k  +++++++GW +F + + +  g +++Fk++g+s+f  ++
  snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1 15 TRINGPNGRVWQLGL--EKDENGTWFSDGWDKFLDYHSISNGHILIFKYEGNSTFDVLF 71
                                                       467789*********..**********************************99996655 PP
2B356.74.5e-18237332199
                                                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.E CS
                                                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.y 59 
                                                        ffk+ ++ ++  ++ +++p  fa ++  +  e   +tl+d++g+++  ++ yr +sg+  
  snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1 237 FFKAILRRHNIYNSFVYVPAGFAMKYL-P-SE--SITLQDSEGKRFPARCFYREGSGAgR 292
                                                        89999999***************9994.3.23..5*****************88888889 PP

                                                        EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                                 B3  60 vltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                         ++kGW  F+++++L+egD++vF+l++r++  l v++fr+
  snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1 293 SIGKGWATFAREHDLEEGDVLVFELINRETIVLEVHIFRA 332
                                                        9*************************999999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.956175IPR003340B3 DNA binding domain
PfamPF023622.7E-81471IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-111771IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-111770IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-81971No hitNo description
Gene3DG3DSA:2.40.330.108.5E-20230332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-20231331IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-21236331No hitNo description
PROSITE profilePS5086312.661237333IPR003340B3 DNA binding domain
SMARTSM010193.7E-16237333IPR003340B3 DNA binding domain
PfamPF023625.4E-17237332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDEVISAIN NKSITRINGP NGRVWQLGLE KDENGTWFSD GWDKFLDYHS ISNGHILIFK  60
YEGNSTFDVL FMFDMTAGKI DYPIDSLSSD EEPNFVANEE EEKDFGYNDL SVSTTYSPSQ  120
NSSESWTSDE YFSQGVLKKR NKYTTWTDRK KRHIRKGACS NGQAATQSCD KCGHHKESEF  180
AKFDEEAAQT PKEDSLLTTE VDDFSATSGF SKFSKTIQAA RKRARKAADM FQSEYPFFKA  240
ILRRHNIYNS FVYVPAGFAM KYLPSESITL QDSEGKRFPA RCFYREGSGA GRSIGKGWAT  300
FAREHDLEEG DVLVFELINR ETIVLEVHIF RAIDYLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1921533625146B3 domain-containing transcription factor VRN1
4i1k_B8e-1921533625146B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136155LKKRNKYTTWTDRKKRHIRK
2137150KKRNKYTTWTDRKK
3137151KKRNKYTTWTDRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874371.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9F0K21e-139A0A2N9F0K2_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-34B3 family protein