PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 313aa    MW: 35671.5 Da    PI: 6.1392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.94.2e-3361163199
                                                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEET CS
                                                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkks 56 
                                                        f+k ltpsdv+k++rlv+pk++ae++    g ++ ++  l++edesg+ W+++++y+++s
  snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1  61 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSSDKGLLLSFEDESGKCWRFRYSYWNSS 120
                                                        99***************************966777899********************** PP

                                                        TEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                                 B3  57 gryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                        ++yvltkGW+++vk+++L++gD+v+F+++++++ +l+++++r+
  snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1 121 QSYVLTKGWSRYVKEKRLDAGDVVLFERHRTDCDRLFIGWRRR 163
                                                        ***************************98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-4350166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-3156162IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-2959153No hitNo description
SMARTSM010195.9E-2761164IPR003340B3 DNA binding domain
PfamPF023626.6E-3061163IPR003340B3 DNA binding domain
PROSITE profilePS5086314.14261164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MFRNPNTPFN FNLNDENDND EDLDDQNPTS QPQEFEQQQQ QQPDDHQENE EAAAQQKEHM  60
FEKPLTPSDV GKLNRLVIPK QHAEKYFPLG GDSSDKGLLL SFEDESGKCW RFRYSYWNSS  120
QSYVLTKGWS RYVKEKRLDA GDVVLFERHR TDCDRLFIGW RRRGSVAAHD SSCGAGGSGG  180
GVVAHNSTTT SACASGAVSE AWTRAFYNTH PYPTHHHHHH QQHHSQPLPY QPDSCLHAAE  240
SSSSQVENQT TPVGNSKILR LFGVNLECQT EDESVPSVLP DNDHNHASST YQHYYHHQHD  300
YSSSVPHDHM VRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-52571744124B3 domain-containing transcription factor NGA1
5os9_B2e-52571744124B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878122.11e-168B3 domain-containing protein At2g36080-like isoform X1
SwissprotQ9FNI32e-67Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2N9F8Y01e-113A0A2N9F8Y0_FAGSY; Uncharacterized protein
STRINGVIT_08s0007g02810.t012e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.24e-59B3 family protein