PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold23790-augustus-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 270aa    MW: 31142.9 Da    PI: 9.8462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold23790-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67e-161771799
                                                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                                            B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                                                  ++p kf++e+g +   s   +l+ + gr W v l  +k+++ +++++GW++Fv+ + ++ g f+vF+
  maker-scaffold23790-augustus-gene-0.4-mRNA-1  1 SIPEKFVSEFGDE--LSSVAKLTVPYGRIWHVGL--EKSDKNIWFGDGWQDFVEYHSICYGYFLVFR 63
                                                  69********855..7779***************..******************************* PP

                                                  E-SSSEE..EEEEE-S CS
                                            B3 84 ldgrsefelvvkvfrk 99
                                                  ++g+s+f  +v vf+k
  maker-scaffold23790-augustus-gene-0.4-mRNA-1 64 YEGNSNF--HVLVFDK 77
                                                  ***9999..****998 PP
2B360.92.2e-19176264898
                                                   -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHH CS
                                            B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvka 71 
                                                   +++ ++ ++++p +fa ++ ++   +k ++l++++g++W  k+i  ++ s+++ +++GW  F ++
  maker-scaffold23790-augustus-gene-0.4-mRNA-1 176 PNYIQRYIMYVPVQFAVKYLSQ---PKIVKLQTSNGKQWPAKCILrDRASSAMNIGRGWTVFSRD 237
                                                   455566679**********655...567***************99777788899*********** PP

                                                   HT--TT-EEEEEE-SSSEE..EEEEE- CS
                                            B3  72 ngLkegDfvvFkldgrsefelvvkvfr 98 
                                                   n+L+egD++vF+l++++   l+v++fr
  maker-scaffold23790-augustus-gene-0.4-mRNA-1 238 NNLEEGDVCVFELIKKQPVVLKVSIFR 264
                                                   **************9988889999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.00E-14176No hitNo description
SuperFamilySSF1019361.69E-19185IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-6178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-19178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.424178IPR003340B3 DNA binding domain
PfamPF023621.9E-11177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-22162264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-21163264IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-19168264No hitNo description
PROSITE profilePS5086312.435169266IPR003340B3 DNA binding domain
SMARTSM010191.3E-16170266IPR003340B3 DNA binding domain
PfamPF023622.2E-17176264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
SIPEKFVSEF GDELSSVAKL TVPYGRIWHV GLEKSDKNIW FGDGWQDFVE YHSICYGYFL  60
VFRYEGNSNF HVLVFDKTAT EIQYPSSKNC KLEDQVDVLK LGDANVSMHD KLDENEMSDS  120
DKWPTKHGVR EKFLKKRYSG TSSKKKVKMS RGRERAIQAA KMLKPKNPSF IGVLRPNYIQ  180
RYIMYVPVQF AVKYLSQPKI VKLQTSNGKQ WPAKCILRDR ASSAMNIGRG WTVFSRDNNL  240
EEGDVCVFEL IKKQPVVLKV SIFRVVDYAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-3013626815145B3 domain-containing transcription factor VRN1
4i1k_B2e-3013626815145B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901628.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9HQJ91e-137A0A2N9HQJ9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-62B3 family protein