PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold15291-snap-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 241aa    MW: 28153.4 Da    PI: 8.5518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold15291-snap-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-164831499
                                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                                        B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
                                              +r+++p kf++e+g +   s+ ++l  + g +W+v l  +k  + +++ +GWk+Fv+   ++ g f+vFk+
  maker-scaffold15291-snap-gene-0.9-mRNA-1  4 HRMRIPEKFVREFGDE--LSTSVKLIVTYGCVWQVGL--EKANKNIWFCDGWKDFVEYYSICYGYFLVFKY 70
                                              69***********966..8899***************..999999************************** PP

                                              -SSSEE..EEEEE-S CS
                                        B3 85 dgrsefelvvkvfrk 99
                                              +g+s+f  +v vf+k
  maker-scaffold15291-snap-gene-0.9-mRNA-1 71 QGNSNF--HVLVFDK 83
                                              **9999..****998 PP
2B350.63.4e-161682323498
                                               SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                        B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                               +  +l +++gr+W v++ y+ +s+++ +++GW eF++ n+L egD++vF+l++r+   l+v++fr
  maker-scaffold15291-snap-gene-0.9-mRNA-1 168 QIAKLANSEGRQWPVNCYYKPSSSAMNMGQGWIEFARHNDLAEGDVCVFELIKRKPVVLNVSMFR 232
                                               468999***********99**********************************999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.733184IPR003340B3 DNA binding domain
SMARTSM010191.7E-7184IPR003340B3 DNA binding domain
CDDcd100175.54E-16482No hitNo description
Gene3DG3DSA:2.40.330.107.7E-20484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-20491IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-11483IPR003340B3 DNA binding domain
SMARTSM010191.5E-4143234IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-17145235IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-14149232No hitNo description
Gene3DG3DSA:2.40.330.102.0E-15152232IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-14167232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.871172234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MPVHRMRIPE KFVREFGDEL STSVKLIVTY GCVWQVGLEK ANKNIWFCDG WKDFVEYYSI  60
CYGYFLVFKY QGNSNFHVLV FDKTATEIQY PLSMNCKLED QADIMELEDA NISMHHKNDN  120
EMSSKGKFKM SRGRERAIQA ARMFKPKNPS FIGIMRHYNM SSRYMHDQIA KLANSEGRQW  180
PVNCYYKPSS SAMNMGQGWI EFARHNDLAE GDVCVFELIK RKPVVLNVSM FRVVDFDIPA  240
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1912323621145B3 domain-containing transcription factor VRN1
4i1k_B4e-1912323621145B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901785.11e-123B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9HQJ91e-113A0A2N9HQJ9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-28B3 family protein