PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13933-snap-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 395aa    MW: 45341.2 Da    PI: 9.8127
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13933-snap-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.1e-169851799
                                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                                              ++pkkf++++g +   s +  l+ ++g +W+vk+   k++g+++++ GW eF++ + L  g f+v++++g+
  maker-scaffold13933-snap-gene-0.8-mRNA-1  9 RIPKKFISKYGVD--LSNMAFLTIPNGTKWKVKM--AKRDGEVWFQHGWCEFARFHALAPGHFLVLRYEGN 75
                                              69********877..787899999**********..**********************************9 PP

                                              SEE..EEEEE-S CS
                                        B3 88 sefelvvkvfrk 99
                                              s f  +v +f++
  maker-scaffold13933-snap-gene-0.8-mRNA-1 76 SHF--YVLIFDA 85
                                              999..**99987 PP
2B355.88.3e-18229326199
                                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                               f  v  ps+v   + l++p +fa++++ k  ++  ++l   +g + +vk+++ k + +  +++GWk+F+
  maker-scaffold13933-snap-gene-0.8-mRNA-1 229 FMVVIQPSYVYPGDSLSVPSSFAKKYMRK-MSGEFVILWYFNGGTCSVKFSFYKAQTKAKFRQGWKKFA 296
                                               6678889*******************755.4566899999***************************** PP

                                               HHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                        B3  70 kangLkegDfvvFkldgrsefelvvkvfrk 99 
                                               ++n+Lk+gD+++F+l++  e  ++v +fr+
  maker-scaffold13933-snap-gene-0.8-mRNA-1 297 RDNNLKVGDVCIFELINGVEVAFKVAIFRA 326
                                               ****************87666689999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.534186IPR003340B3 DNA binding domain
SMARTSM010191.9E-9286IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-20785IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-19886IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-15984No hitNo description
PfamPF023623.8E-13985IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-24221326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-24222326IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-25227325No hitNo description
PROSITE profilePS5086312.915229327IPR003340B3 DNA binding domain
PfamPF023624.3E-16229326IPR003340B3 DNA binding domain
SMARTSM010193.2E-15229327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLWRFFLQRI PKKFISKYGV DLSNMAFLTI PNGTKWKVKM AKRDGEVWFQ HGWCEFARFH  60
ALAPGHFLVL RYEGNSHFYV LIFDATATEI DYPLDDQHNI LRMEDIERDD IDNSVEIMDG  120
FIPSQKTREK SPLPCPLPHK RAKTNPRSSV LQAGDTHFRL ELTKSKGSVL EKSKMNAGSL  180
TEAHFSAEEY SGATKRCPKS EVIERTLSAS EKDRALQRVR AFESKNPFFM VVIQPSYVYP  240
GDSLSVPSSF AKKYMRKMSG EFVILWYFNG GTCSVKFSFY KAQTKAKFRQ GWKKFARDNN  300
LKVGDVCIFE LINGVEVAFK VAIFRAANDI DCPLLNGKEL LDSDQLMGLE EIDFNAKAAR  360
MSTNQRRLKA KALVKNQEYK ALEKKQELMT TNAFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-2320432624142B3 domain-containing transcription factor VRN1
4i1k_B6e-2320432624142B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924490.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9FQS44e-97A0A2N9FQS4_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-52B3 family protein