PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11527-augustus-gene-0.6-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92195.9 Da    PI: 6.3464
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11527-augustus-gene-0.6-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-182683457
                                                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                      Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                                    ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  maker-scaffold11527-augustus-gene-0.6-mRNA-2 26 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                                                  5789****************************************************97 PP
2START155.44.6e-491643712204
                                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHC CS
                                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveell 66 
                                                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s++++g a+ra+g+v  +++   +e+l
  maker-scaffold11527-augustus-gene-0.6-mRNA-2 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCNGVAARACGLVSLEPT-KIAEIL 227
                                                   7899******************************************************.777777 PP

                                                   CCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEE CS
                                         START  67 ddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdv 128
                                                   +d++ W + +++ e+      g  g+++l +++++a+++l+p Rdf+++Ry+ +l  g++v++++
  maker-scaffold11527-augustus-gene-0.6-mRNA-2 228 KDRPSWFRECRSLEVFTMFPAGngGTIELVYTQTYAPTTLAPaRDFWTLRYTTSLDNGSLVVCER 292
                                                   7777***********999999999***************************************** PP

                                                   EEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHH CS
                                         START 129 Svdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgla 190
                                                   S++     p+    s++vRae+lp g+li+p+++g+s +++v+h +l++++++++lr+l++s+ +
  maker-scaffold11527-augustus-gene-0.6-mRNA-2 293 SLSGSGAGPNaaaASQFVRAEMLPCGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKV 357
                                                   ***99999999999*************************************************** PP

                                                   HHHHHHHHHTXXXX CS
                                         START 191 egaktwvatlqrqc 204
                                                    ++k++ a+l++ +
  maker-scaffold11527-augustus-gene-0.6-mRNA-2 358 VAQKMTIAALRYIR 371
                                                   *********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1272084IPR001356Homeobox domain
SMARTSM003891.4E-142288IPR001356Homeobox domain
SuperFamilySSF466893.29E-162486IPR009057Homeodomain-like
CDDcd000861.24E-152585No hitNo description
PfamPF000461.1E-152683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-182783IPR009057Homeodomain-like
CDDcd146863.68E-677116No hitNo description
PROSITE profilePS5084826.711154382IPR002913START domain
CDDcd088757.68E-69158374No hitNo description
SuperFamilySSF559611.15E-34163375No hitNo description
Gene3DG3DSA:3.30.530.202.1E-20163363IPR023393START-like domain
SMARTSM002341.3E-39163373IPR002913START domain
PfamPF018521.2E-46164371IPR002913START domain
PfamPF086701.5E-49699842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAMAVAQQHR ESSSGSISRH LDAGKYVRYT AEQVEALERV YSECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TTSAATTDAS CDSVVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCNGVAA RACGLVSLEP TKIAEILKDR PSWFRECRSL  240
EVFTMFPAGN GGTIELVYTQ TYAPTTLAPA RDFWTLRYTT SLDNGSLVVC ERSLSGSGAG  300
PNAAAASQFV RAEMLPCGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ  360
KMTIAALRYI RQIAQETSGE VVYGLGRQPA VLRTFSQRLS RGFNDAVNGF NDDGWSLINS  420
DGAEDVIIAV NSTKNLSATS NPANSLSFVG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYSA ASLKAGSYAY PGMRPTRFTG SQIIMPLGHT IEHEELLEVI RLEGHSLPQE  540
DAFASRDIHL LQICSGVDEN AVGACSELVF APIDEMFPDD APLLPSGFRI IPLDSKTSDA  600
KDSLSTHRTL DLTSSLEVGP ATNHAAGDVP SCHYSRSVLT IAFQFPFDSS LQDNVATMAR  660
QYVRSVISSV QRVAMAISPT GLSPAMGPKL SPGSPEALTL AHWICQSYSY HIGADLLRSD  720
SLGGDSVLKH LWNHQDAILC CSLKTVPVFI FANQTGLDML ETTLVALQDI TLDKIFDESG  780
RKALCADFAK LMQQGFTYLP GGICMSTMGR HVSYEQAVAW KVLAADETTV HCLAFSFVNW  840
SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926843.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2N9HWK20.0A0A2N9HWK2_FAGSY; Uncharacterized protein
STRINGcassava4.1_001649m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]