PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07005-augustus-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 288aa    MW: 33444.4 Da    PI: 10.6094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07005-augustus-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.1e-1929119198
                                                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
                                             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                                                    ffk+ +ps +   + l+lp kf++e+g k   s + tl+ ++g  W+v+l  +k  + +++ +G
  maker-scaffold07005-augustus-gene-0.15-mRNA-1  29 FFKIILPSTMRDMK-LRLPEKFVREYGDK--LSSDATLTVPNGSIWQVRL--EKANNNIWFHGG 87 
                                                    78888887777776.***********977..7779***************..99999******* PP

                                                    HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                             B3  65 WkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                    W++Fv+ + ++ g f+vFk++g+s+f  +v vf+
  maker-scaffold07005-augustus-gene-0.15-mRNA-1  88 WRDFVDYHSINYGYFLVFKYKGNSKF--HVLVFD 119
                                                    **********************9999..999987 PP
2B365.67.3e-21193283698
                                                    ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHH CS
                                             B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeF 68 
                                                    +++++ k++ +++  +fa+++ + k+    ++l+ +sg++W  +++yr +s++ ++++kGWk+F
  maker-scaffold07005-augustus-gene-0.15-mRNA-1 193 IQAYNIKLAYVYVTTEFAKKYVQRKN---FVKLQASSGKRWPCQFRYRDGSSTpMTIGKGWKSF 253
                                                    67889999999**********65554...5*****************6666666********** PP

                                                    HHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                             B3  69 vkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                    v++ng+k+gD++vF+l++r++  l+v++fr
  maker-scaffold07005-augustus-gene-0.15-mRNA-1 254 VRDNGIKAGDVCVFELINRMNVVLKVSIFR 283
                                                    *******************9999****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-2722121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2524120IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-2228119No hitNo description
PROSITE profilePS5086314.52228121IPR003340B3 DNA binding domain
PfamPF023625.0E-1629119IPR003340B3 DNA binding domain
SMARTSM010191.4E-2129121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-23181284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-20182283IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-18187283No hitNo description
PROSITE profilePS5086313.394188285IPR003340B3 DNA binding domain
SMARTSM010191.3E-14189285IPR003340B3 DNA binding domain
PfamPF023621.9E-18193283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAPKARARRS RVGPNWDNHR PSRSRPSHFF KIILPSTMRD MKLRLPEKFV REYGDKLSSD  60
ATLTVPNGSI WQVRLEKANN NIWFHGGWRD FVDYHSINYG YFLVFKYKGN SKFHVLVFDM  120
TATEIEYPSN GDKKRQGNLN EIEMSTSYQT ELINLENSPM SSTRGSVLPG GRERTLEAAR  180
MFKPKNPSYI RIIQAYNIKL AYVYVTTEFA KKYVQRKNFV KLQASSGKRW PCQFRYRDGS  240
STPMTIGKGW KSFVRDNGIK AGDVCVFELI NRMNVVLKVS IFRMAEYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1716128721145B3 domain-containing transcription factor VRN1
4i1k_B3e-1716128721145B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901689.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_023901698.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_023901705.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_023901713.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9HQA11e-100A0A2N9HQA1_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-32B3 family protein