PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05550-snap-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 427aa    MW: 48473.3 Da    PI: 10.339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05550-snap-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.8e-1718941799
                                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                                         B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                                               ++p  f++ ++g    +k  +l+d++g+sW+v l  +++ +r  + +GW  F++++ L+ gDf++Fk+++
  maker-scaffold05550-snap-gene-0.14-mRNA-1 18 SIPQAFIKYFNGT--IPKRAILKDQTGKSWRVGL--EQTNRRLCFNSGWHCFASDHSLEFGDFLIFKFNR 83
                                               89****9555555..6778***************..99999**************************988 PP

                                               SSEE..EEEEE-S CS
                                         B3 87 rsefelvvkvfrk 99
                                               +s f   vk+f+k
  maker-scaffold05550-snap-gene-0.14-mRNA-1 84 SSLF--EVKIFSK 94
                                               7777..9999987 PP
2B338.32.3e-122173011498
                                                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-E CS
                                         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDf 79 
                                                  + +p +fa+++ ++  +  ++ l+ ++g  W vk+i+r  + +    lt+G + F ++n+L++ D+
  maker-scaffold05550-snap-gene-0.14-mRNA-1 217 FFMHIPHTFAKKYLEE--KCLDVFLRVPEGIAWPVKYIFRTVGTHliAELTSGGRAFSRDNKLEVCDV 282
                                                5689*********533..5679***************99888877677799***************** PP

                                                EEEEE-SSSEE..EEEEE- CS
                                         B3  80 vvFkldgrsefelvvkvfr 98 
                                                ++F++++  + ++ v +fr
  maker-scaffold05550-snap-gene-0.14-mRNA-1 283 CIFEFIKGIDVSFIVNIFR 301
                                                ****998766667999887 PP
3B351.32e-163484241898
                                                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
                                         B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 
                                                +p  f+++++     ++  ++ +  +rsW vkl    ++++ y l++GW+ F k+n LkegD+++F+l
  maker-scaffold05550-snap-gene-0.14-mRNA-1 348 VPSGFIKKYKRG---TTRTVMLQVANRSWPVKL--LVYPRAsYKLSAGWSAFMKENTLKEGDVCIFEL 410
                                                577777777544...33455566799*******..6666555************************** PP

                                                -SSSEE..EEEEE- CS
                                         B3  85 dgrsefelvvkvfr 98 
                                                ++r++  ++v +fr
  maker-scaffold05550-snap-gene-0.14-mRNA-1 411 IKRDDIVFKVNIFR 424
                                                *9999989999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.48295IPR003340B3 DNA binding domain
CDDcd100175.80E-14593No hitNo description
SMARTSM010192.0E-101395IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-201697IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-201797IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-141894IPR003340B3 DNA binding domain
PROSITE profilePS508639.234204303IPR003340B3 DNA binding domain
SMARTSM010190.01207303IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-13212301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-13217301IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-14217301No hitNo description
PfamPF023622.3E-10218301IPR003340B3 DNA binding domain
SMARTSM010191.9E-8335426IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-15347424IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-17347424IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.548348426IPR003340B3 DNA binding domain
CDDcd100175.31E-14348424No hitNo description
PfamPF023622.2E-13348425IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLNRLISDEN SIYFILQSIP QAFIKYFNGT IPKRAILKDQ TGKSWRVGLE QTNRRLCFNS  60
GWHCFASDHS LEFGDFLIFK FNRSSLFEVK IFSKTGCKKE QAAPIGKPIP FVNLEEDSKT  120
ELTCSRPTRF GKRKRSEVGL KKIEAGGSSE ASRHKLKRTT GTNLTKTPHF DRMRQIGVTV  180
DTIWLKAKVP KEMQNLTANG GSRALETASA FKSGNPFFMH IPHTFAKKYL EEKCLDVFLR  240
VPEGIAWPVK YIFRTVGTHL IAELTSGGRA FSRDNKLEVC DVCIFEFIKG IDVSFIVNIF  300
RVAEDANCCL SPGKPKQLIR EDCTSSRASL ALEAARKFIS ENPFIKDVPS GFIKKYKRGT  360
TRTVMLQVAN RSWPVKLLVY PRASYKLSAG WSAFMKENTL KEGDVCIFEL IKRDDIVFKV  420
NIFRGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1732442428141B3 domain-containing transcription factor VRN1
4i1k_B4e-1732442428141B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926623.11e-113putative B3 domain-containing protein At5g66980
TrEMBLA0A2N9J9U71e-154A0A2N9J9U7_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-21B3 family protein