PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05156-augustus-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 315aa    MW: 36034.5 Da    PI: 10.0079
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05156-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-1522754198
                                                   TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                             B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                                      ++W+v +  +  +++ +++kGW+ Fv++n Lk gDf++F++dg+s+f   vk++ 
  maker-scaffold05156-augustus-gene-0.10-mRNA-1 22 GPRKTWRVDV--KEVDSSLFFQKGWSAFVRDNSLKMGDFLLFRYDGNSNF--SVKIYG 75
                                                   3459******..999999****************************9999..666654 PP
2B340.45.2e-13218312398
                                                    EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEE..E-T CS
                                             B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryv..ltk 63 
                                                      + p +v+ s+ l +p +f++ +++ k  ++ +tl++++g  W+++l +y+++ g+++  l++
  maker-scaffold05156-augustus-gene-0.10-mRNA-1 218 VLMYPCYVN-SDYLNVPTSFFKIYMEGK--QRNVTLQTSDG-LWTMRLvRYSNRVGKFYgkLKQ 277
                                                    444444555.566********8886443..44689888555.799999444555555543388* PP

                                                    THHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                             B3  64 GWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                    GW  F+  n L +gD++vF+l++++++ ++v+vf+
  maker-scaffold05156-augustus-gene-0.10-mRNA-1 278 GWHAFAIGNALIVGDVCVFELIDKTGGLFKVSVFK 312
                                                    **********************9988878888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.0E-4177IPR003340B3 DNA binding domain
PROSITE profilePS5086314.508177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18179IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-14174No hitNo description
SuperFamilySSF1019362.55E-18281IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-12274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18211312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-17211313IPR015300DNA-binding pseudobarrel domain
CDDcd100178.20E-16214312No hitNo description
SMARTSM010198.8E-10215314IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335215314IPR003340B3 DNA binding domain
PfamPF023623.2E-10218311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
RIPEAFVKYF DGEVPNSSVL WGPRKTWRVD VKEVDSSLFF QKGWSAFVRD NSLKMGDFLL  60
FRYDGNSNFS VKIYGRDCCE KGVAGASRKS YTPVYGNGKE EKEKMRNYLK RKSEKLLVGT  120
GENEEKKKRG YHQKMKREKL LVSTGTNEVD TKEIEVIYID SDANDDNIGK CMGSIRKERT  180
GIEVIPRHLS YKPPKMKKGA RALEAASKFI SNYPSFQVLM YPCYVNSDYL NVPTSFFKIY  240
MEGKQRNVTL QTSDGLWTMR LVRYSNRVGK FYGKLKQGWH AFAIGNALIV GDVCVFELID  300
KTGGLFKVSV FKCSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109128KRKSEKLLVGTGENEEKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917164.11e-151putative B3 domain-containing protein Os03g0621600
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16060710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-26B3 family protein