PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04870-augustus-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 328aa    MW: 36918.1 Da    PI: 5.237
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04870-augustus-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.58.9e-2440134186
                                       trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwe 55 
                                                    rWt++e+l Li++++ +e+ +r g+         + +p+W++vs+++++rg++r+p+qC+++w 
  maker-scaffold04870-augustus-gene-0.13-mRNA-1  40 RWTRDETLILIQGKKVIEDGVRGGRrststfgscQVEPKWDSVSSYCKQRGVKRGPVQCRKRWG 103
                                                    8**************9999999553333444444****************************** PP

                                       trihelix  56 nlnkrykkikegekkrtsessstcpyfdqle 86 
                                                    nl ++ykkik++e++ ++e++s + + ++++
  maker-scaffold04870-augustus-gene-0.13-mRNA-1 104 NLLTDYKKIKRWESQIKEEAESFWMMRNDIR 134
                                                    ****************999999999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-537109IPR009057Homeodomain-like
PfamPF138375.6E-1339130No hitNo description
PROSITE profilePS500906.92240106IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAPESNSLNE NADCPHVGLV KQEALIDSTD DGNKITRHPR WTRDETLILI QGKKVIEDGV  60
RGGRRSTSTF GSCQVEPKWD SVSSYCKQRG VKRGPVQCRK RWGNLLTDYK KIKRWESQIK  120
EEAESFWMMR NDIRREKKLA SFFDKEIYNA LDGMAFSAAT FPLPLVAVPA NENDSDGAKA  180
EVEEEDGDEE ETPVAVFDSH RHATAEDGLF SDFEHSEQEE SGCSPEYETV SGTVKGKQPG  240
SASMWRESIS QEERKRRRLS LDGQEDASNL GNQLVKVLKM NSNKLNAHLE AQNISCQLDR  300
DQRKEHTDSL VAALSKVTDA LVRIADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253257RKRRR
2254258KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887939.10.0trihelix transcription factor ASR3-like
TrEMBLA0A2N9FP461e-178A0A2N9FP46_FAGSY; Uncharacterized protein
STRINGVIT_17s0000g00270.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-89Trihelix family protein