PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04348-snap-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 357aa    MW: 40514.8 Da    PI: 9.8856
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04348-snap-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.1e-1857156199
                                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHH CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWk 66 
                                                f  v+ ps v     ++++ +fa+++  k  ++  ++l++ +gr+W+vk+++     + + ++++GWk
  maker-scaffold04348-snap-gene-0.24-mRNA-1  57 FMVVMQPSCVYPGTSMSISPSFAKKYTRK-MSGEFVILRSFNGRTWSVKFSFyeAIAQTKAMFQQGWK 123
                                                667788888888999***********654.45668***************99876666669******* PP

                                                HHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                         B3  67 eFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                eF+++n+Lk+g +++F+l++  e  ++v +fr+
  maker-scaffold04348-snap-gene-0.24-mRNA-1 124 EFARDNNLKVGAVCIFELTNGIEVAFKVAIFRA 156
                                                *****************9987444478888885 PP
2B338.42.2e-122723541798
                                                E--HH.H.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE.EEE-TTHHHHHHHHT--TT-E CS
                                         B3  17 vlpkk.faeehggkkeesktltledesgrsWevkliy...rkksgr.yvltkGWkeFvkangLkegDf 79 
                                                ++p+k f++++ + +  +++l++ d   r W +kl y   r ++g+ + l++GW  F+++n L+++D+
  maker-scaffold04348-snap-gene-0.24-mRNA-1 272 YIPRKgFTKDYTKGSVLTVKLQVVD---RLWPMKL-YayeRMYQGSfCKLSSGWTAFARENTLQVRDV 335
                                                6776614555533334555555555...99*****.3356555555799******************* PP

                                                EEEEE-SSSEE..EEEEE- CS
                                         B3  80 vvFkldgrsefelvvkvfr 98 
                                                +vF+l+ r++  l+v++fr
  maker-scaffold04348-snap-gene-0.24-mRNA-1 336 CVFELIMRDDVVLKVHIFR 354
                                                ******9999999***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-2152156IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-2352156IPR015300DNA-binding pseudobarrel domain
CDDcd100177.37E-2356155No hitNo description
SMARTSM010199.1E-1357157IPR003340B3 DNA binding domain
PROSITE profilePS5086314.2457157IPR003340B3 DNA binding domain
PfamPF023621.7E-1657156IPR003340B3 DNA binding domain
SMARTSM010190.0043255356IPR003340B3 DNA binding domain
CDDcd100177.80E-13272354No hitNo description
SuperFamilySSF1019363.34E-12272354IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-11272354IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-10272354IPR003340B3 DNA binding domain
PROSITE profilePS508639.671297356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNATPLTEPY FQAEECSRAT KRCPKSEVIE RIQPLSASEK DRALQRVRAF VSNNLFFMVV  60
MQPSCVYPGT SMSISPSFAK KYTRKMSGEF VILRSFNGRT WSVKFSFYEA IAQTKAMFQQ  120
GWKEFARDNN LKVGAVCIFE LTNGIEVAFK VAIFRAANDI DCPLLNGSAH RGGGNRVGHK  180
SSPLVKLESD CNLDDVSFSH DQCPAKDGCV SMSTNRRRLK AKALVKKQDY KALEKKQELV  240
TSNGKAENLV RANAFKSENP LYVSLPHGIM NYIPRKGFTK DYTKGSVLTV KLQVVDRLWP  300
MKLYAYERMY QGSFCKLSSG WTAFARENTL QVRDVCVFEL IMRDDVVLKV HIFRCFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-173135417141B3 domain-containing transcription factor VRN1
4i1k_B9e-173135417141B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891769.10.0B3 domain-containing transcription factor VRN1-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-18B3 family protein