PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03587-augustus-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 962aa    MW: 107976 Da    PI: 9.0519
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03587-augustus-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.95.3e-20221088100
                                                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                                             B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                                                    s  ++s+rl +p +f+++++g +  s  +tle +sg++W vkl   ++ +  +l +GW eFv +
  maker-scaffold03587-augustus-gene-0.14-mRNA-1  22 SAIFSSQRLKIPVRFVRHMKGRT--SGLVTLEGPSGNRWHVKL--IQQNDDLFLHQGWPEFVMD 81 
                                                    667899**********8888774..458***************..7777789************ PP

                                                    HT--TT-EEEEEE-SSSEE..EEEEE-SS CS
                                             B3  72 ngLkegDfvvFkldgrsefelvvkvfrks 100
                                                    + +++gDf+vF++dg+  f  +v+vf+ks
  maker-scaffold03587-augustus-gene-0.14-mRNA-1  82 HFIESGDFLVFRYDGELHF--TVQVFDKS 108
                                                    *************996666..9***9985 PP
2B3443.8e-143194021197
                                                    HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT CS
                                             B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkang 73 
                                                    + +++  +p kf  +h   ++++++++l++++g+ W+v+    ++   +++l +GW  Fv+ n+
  maker-scaffold03587-augustus-gene-0.14-mRNA-1 319 NYLHNANIPYKFSMAHL--PNSKIKIVLQNLKGECWTVNSVPtTRVNTSHTLCGGWIAFVRCND 380
                                                    3445569*****99995..346789**************955555556699************* PP

                                                    --TT-EEEEEE-SSSEE..EEEEE CS
                                             B3  74 LkegDfvvFkldgrsefelvvkvf 97 
                                                    +k+gD++vF+l+++ e   +v+++
  maker-scaffold03587-augustus-gene-0.14-mRNA-1 381 IKVGDICVFELVRECEL--RVHIL 402
                                                    ***********986555..66654 PP
3B351.51.9e-165376191196
                                                    HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT CS
                                             B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkang 73 
                                                    + s  l +p +f ++h   ++++++++l++++g+ W+v+   + k+++ +++ +GW  Fv+ n+
  maker-scaffold03587-augustus-gene-0.14-mRNA-1 537 SGSYTLKIPYQFSTAHL--PNCKTEIVLRNLKGKCWTVNSVPDSKGRMgHTFCGGWMAFVRGND 598
                                                    5566799******9996..45899****************775555545*************** PP

                                                    --TT-EEEEEE-SSSEE..EEEE CS
                                             B3  74 LkegDfvvFkldgrsefelvvkv 96 
                                                    +k gD+++F+l+g+ e  ++v++
  maker-scaffold03587-augustus-gene-0.14-mRNA-1 599 VKIGDICIFELVGECE--MLVHI 619
                                                    ***********99543..47776 PP
4B355.31.2e-177127881698
                                                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                                             B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                                     v+pk+f ++ +  k+ ++  tl+ +sg +W+v+l  + +++++++  GW++Fvk++ L+e D 
  maker-scaffold03587-augustus-gene-0.14-mRNA-1 712 QVIPKTFSDNLK--KKLPQSATLKGPSGLTWDVEL--TTNDDTTFFNHGWQKFVKDHSLEETDL 771
                                                    49*****85555..558889***************..*************************** PP

                                                    EEEEE-SSSEE..EEEEE- CS
                                             B3  80 vvFkldgrsefelvvkvfr 98 
                                                    +vF+++g s+f   v +f+
  maker-scaffold03587-augustus-gene-0.14-mRNA-1 772 LVFRYNGWSQF--DVLIFD 788
                                                    *****977888..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-2511110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-2311110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.0315108IPR003340B3 DNA binding domain
CDDcd100175.95E-1915106No hitNo description
SMARTSM010193.3E-1317108IPR003340B3 DNA binding domain
PfamPF023621.8E-1722107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-19268290IPR015300DNA-binding pseudobarrel domain
CDDcd100175.29E-15274402No hitNo description
PROSITE profilePS5086311.589309405IPR003340B3 DNA binding domain
SMARTSM010192.7E-10313405IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-19316403IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-11318401IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-19325403IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-22519621IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-23520621IPR015300DNA-binding pseudobarrel domain
CDDcd100174.72E-19525619No hitNo description
PROSITE profilePS5086313.211527623IPR003340B3 DNA binding domain
SMARTSM010192.2E-14527623IPR003340B3 DNA binding domain
PfamPF023628.8E-14528619IPR003340B3 DNA binding domain
PROSITE profilePS5086314.367697790IPR003340B3 DNA binding domain
SMARTSM010192.7E-9707790IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-20711788IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-20711788IPR015300DNA-binding pseudobarrel domain
PfamPF023626.1E-15712788IPR003340B3 DNA binding domain
CDDcd100179.08E-16713788No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MDKETRQEMP NAKRPHFFDV YSAIFSSQRL KIPVRFVRHM KGRTSGLVTL EGPSGNRWHV  60
KLIQQNDDLF LHQGWPEFVM DHFIESGDFL VFRYDGELHF TVQVFDKSSC EKEAAFHSEC  120
SQDPSDLGNN MGQKRERDEG ASPSDKIFEG VPKKLRGSSS QLHLGCTVKN QEGKVDMYDG  180
EVCKHEVVAM AKTLREAICP EETRHCGSTL RNSSIVSQSK ASKEKQVLDI VQFNTKASIQ  240
SRNGKEDDLY MHGRVCLSML SAQEVAQSFT SSFPYFVRIM KSFNVSGSYT LVGCFFCFSR  300
FYLSIESYFN ISFMHCPSNY LHNANIPYKF SMAHLPNSKI KIVLQNLKGE CWTVNSVPTT  360
RVNTSHTLCG GWIAFVRCND IKVGDICVFE LVRECELRVH ILGVGREGLD CQNGKVVCSR  420
SSGGRAPSSH KTSKVLPKKT KGKSPKASKR RQEVPFSIDV RKQCSASKTY TRAPVGSQSK  480
AANKKLVQRR KVIEDEVGSK TKGSMRMMLA LDEERAARSF SSSFPNFVRI MKQFNISGSY  540
TLKIPYQFST AHLPNCKTEI VLRNLKGKCW TVNSVPDSKG RMGHTFCGGW MAFVRGNDVK  600
IGDICIFELV GECEMLVHIS GNGKKGLDHQ SGADNELALN RCSVEMGDAC KDWSKWAEDI  660
YWTHFQTFHF YQLLLSGFDR QLFKLLVLAT LYPSLASLSS IVSLLMFVLT LQVIPKTFSD  720
NLKKKLPQSA TLKGPSGLTW DVELTTNDDT TFFNHGWQKF VKDHSLEETD LLVFRYNGWS  780
QFDVLIFDGK NLCEKGASYF VRKCGQTEHD NRCLTKKRLR EGSMDDVRTP LDVDAGCTSP  840
VNSMGDDSVT VPSEQCINSM VAKKRTRQSA RRVGSKKPAT NGEGVKSNPS DDVADSPTNK  900
NGAQVQQFAS NRRPVTEDEI KSALVLAQAA SSDDTFQVVM RPTHVYKRHF LGGTSKTLAP  960
LE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444450PKASKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914243.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2N9IW660.0A0A2N9IW66_FAGSY; Uncharacterized protein
STRINGXP_010089923.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-47B3 family protein