PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03541-snap-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 570aa    MW: 64723.1 Da    PI: 9.9663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03541-snap-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.1e-147643899
                                               EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                         B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                               l+ +sg +W+v++  + ++g+++l+kGW+eF+k   +k+g f+vF+++g+s f  +v +f++
  maker-scaffold03541-snap-gene-0.19-mRNA-1  7 LKLPSGAEWKVEM--TEHDGEVWLKKGWQEFAKYYSVKQGHFLVFRYEGNSHF--HVLIFDA 64
                                               66799********..**********************************9999..****997 PP
2B356.64.8e-18182279198
                                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTH CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGW 65 
                                                f  v+ ps+ + + +l++p +fa+++ +kk++  + +l  ++gr+W vk++      k+++ +++ GW
  maker-scaffold03541-snap-gene-0.19-mRNA-1 182 FMVVMQPSYLHPKLCLSIPIDFASRYLNKKHG--DAILCISDGRKWPVKYTCqmfATKPKS-FFKCGW 246
                                                677899999999989***********766655..68888889********77675555555.69**** PP

                                                HHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                         B3  66 keFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                + F+k+n+L +gD++vF l++ ++ +++v +fr
  maker-scaffold03541-snap-gene-0.19-mRNA-1 247 RTFAKDNNLAVGDVCVFGLSKGTKMSFKVVIFR 279
                                                ******************996666666888887 PP
3B364.81.3e-20432529198
                                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHH CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWk 66 
                                                f  vl ps+   ++ lv+p +fa++h ++k++  +++l+ + ++ W+vk+++  + +++r  l +GWk
  maker-scaffold03541-snap-gene-0.19-mRNA-1 432 FMIVLQPSYIYGNNYLVIPIDFAKKHFSEKHG--DVILQVSGSKIWSVKYNFreTYGRKRAELCSGWK 497
                                                6778999*******************877655..7***************99554455558899**** PP

                                                HHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                         B3  67 eFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                 Fv++n+L++gD++vF++++  e +l+v +fr
  maker-scaffold03541-snap-gene-0.19-mRNA-1 498 AFVRDNNLEVGDVCVFEFIKGIEISLKVVIFR 529
                                                *****************998866668888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.267165IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-16465IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-17565IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.02665IPR003340B3 DNA binding domain
PfamPF023621.3E-10664IPR003340B3 DNA binding domain
CDDcd100171.94E-12763No hitNo description
Gene3DG3DSA:2.40.330.101.3E-23173281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-22175281IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-20180279No hitNo description
SMARTSM010192.0E-8182281IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099182281IPR003340B3 DNA binding domain
PfamPF023622.8E-16182280IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-27424529IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-26425529IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-25430529No hitNo description
SMARTSM010193.0E-19432531IPR003340B3 DNA binding domain
PfamPF023621.5E-18432529IPR003340B3 DNA binding domain
PROSITE profilePS5086315.157432531IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSNLAFLKLP SGAEWKVEMT EHDGEVWLKK GWQEFAKYYS VKQGHFLVFR YEGNSHFHVL  60
IFDASATETE YSLNSSHGEE GKLNEEFHSP KMEEIESDSA VEILGWFPPC PKRRDKSPLP  120
CLRPHKKMKT NPTAKGLKGS STSEQCSNSK VDRRIKPLNN SKIARALQRL RASAFKPKDP  180
YFMVVMQPSY LHPKLCLSIP IDFASRYLNK KHGDAILCIS DGRKWPVKYT CQMFATKPKS  240
FFKCGWRTFA KDNNLAVGDV CVFGLSKGTK MSFKVVIFRV NEEHCLPLPV PALDNGVNQV  300
EPKRTLKYEF EYPSNHEIGM SSSSYKSTTK NLQHSQGNFT TEPQGTQSID RKIIKLQRNL  360
NSPSSMRSFE GQITKLGSGG LNFSAKEEGR GMPDSPRCSE SHGFRETQGL TYIEKARALK  420
RACAFKSKNP YFMIVLQPSY IYGNNYLVIP IDFAKKHFSE KHGDVILQVS GSKIWSVKYN  480
FRETYGRKRA ELCSGWKAFV RDNNLEVGDV CVFEFIKGIE ISLKVVIFRD AKDANRHGDP  540
VNLTQASSNS GYDRAGPRPR PLRPPLRAPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1817252927144B3 domain-containing transcription factor VRN1
4i1k_B4e-1817252927144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926610.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9JC450.0A0A2N9JC45_FAGSY; Uncharacterized protein
TrEMBLA0A2N9JCA90.0A0A2N9JCA9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-39B3 family protein