PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold03324-augustus-gene-0.18-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

GATA

Protein Properties

Length: 236aa MW: 25849.4 Da PI: 5.7831

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03324-augustus-gene-0.18-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.5	3.9e-18	152	186	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l maker-scaffold03324-augustus-gene-0.18-mRNA-1 152 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 186 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	2.47E-14	144	208	No hit	No description
PROSITE profile	PS50114	11.398	146	182	IPR000679	Zinc finger, GATA-type
SMART	SM00401	9.5E-17	146	196	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.1E-13	150	184	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	5.95E-14	151	198	No hit	No description
Pfam	PF00320	6.2E-16	152	186	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	152	177	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009416	Biological Process	response to light stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDVYGGGGGG MSSTADSNFP IDDLLDFSNE QLFSSSSSSS TDSDVTPTQN YLPTPLSLTQ 60 PIVNNGLNYH HHFSTDFTND LCAVPSDDVA ELEWLSQFVD DSFTDFPTND LAGAIAFRSE 120 ASPETGKAKR NGGERGCSQS AAAAEGGEVR RCTHCASEKT PQWRTGPLGP KTLCNACGVR 180 FKSGRLVPEY RPAASPTFVL TQHSNSHRKV MELRRQKELT TQQQQEQMYH HHRQVC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068804	1e-57	BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds.
GenBank	BT070054	1e-57	BT070054.1 Zea mays full-length cDNA clone ZM_BFb0374G07 mRNA, complete cds.
GenBank	BT087798	1e-57	BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds.
GenBank	EU953705	1e-57	EU953705.1 Zea mays clone 1444524 mRNA sequence.
GenBank	EU956206	1e-57	EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds.
GenBank	EU972159	1e-57	EU972159.1 Zea mays clone 376596 mRNA sequence.
GenBank	KJ726957	1e-57	KJ726957.1 Zea mays clone pUT3655 C2C2-GATA transcription factor (GATA28) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023882045.1	1e-139	GATA transcription factor 2
Swissprot	O49741	4e-66	GATA2_ARATH; GATA transcription factor 2
TrEMBL	A0A2N9FJ47	1e-89	A0A2N9FJ47_FAGSY; GATA transcription factor
STRING	evm.model.supercontig_941.1	1e-78	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13550	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	2e-60	GATA transcription factor 2

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]