PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03034-snap-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 367aa    MW: 41985.5 Da    PI: 5.9387
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03034-snap-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.4e-1219110199
                                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeF 68 
                                                ffk+ +ps   +++ l++p kf+ ++g +   s+  tl  ++g +W+v l   k   ++++ ++W++F
  maker-scaffold03034-snap-gene-0.19-mRNA-1  19 FFKIILPSTIENKK-LRIPPKFMLDFGDE--LSTSATLIVPNGGTWKVGL--LKAEWSIWFCECWEDF 81 
                                                78888777777666.********999866..8899***************..999999********** PP

                                                HHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                         B3  69 vkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                v+   +     +vF+++++s+f  +v +f++
  maker-scaffold03034-snap-gene-0.19-mRNA-1  82 VEFYSISIEHLLVFRYERNSNF--HVVLFDT 110
                                                *****************99999..9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-2010111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2013110IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-1518109No hitNo description
PROSITE profilePS5086310.50318111IPR003340B3 DNA binding domain
SMARTSM010191.6E-1019111IPR003340B3 DNA binding domain
PfamPF023624.2E-919109IPR003340B3 DNA binding domain
CDDcd100173.09E-8169236No hitNo description
SMARTSM010190.16171238IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-10172237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-8204248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-7293366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-6294366IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.992297367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEPKASPSRS STSQSPSHFF KIILPSTIEN KKLRIPPKFM LDFGDELSTS ATLIVPNGGT  60
WKVGLLKAEW SIWFCECWED FVEFYSISIE HLLVFRYERN SNFHVVLFDT TATETQYPSN  120
NNVNLEDIVD LTELDEINIS RQYKQSSDTS SKGRERAIGA AKISMPKGRS FMVVMQSIPP  180
KFVLDFGDEL STSVTLIVPN GGTWKEDFVE FYSISVGHLL VFRYERNSNF HVVIFDTTAT  240
ETQYPSNNNV NLEDTVDLTE LDEINISSQY NQPSDTSSKG RERAIGAAKI FMPKGRSFMA  300
VMQSYNIWLN YVYVPKEFVD KHIAWNQFVD LQTCGEKQWR VQCYCHTATS SAMRMGKRWA  360
AFSTKNI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901724.17e-85B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9G1U02e-52A0A2N9G1U0_FAGSY; Uncharacterized protein
TrEMBLA0A2N9HQJ91e-52A0A2N9HQJ9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-28B3 family protein