PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02319-augustus-gene-0.30-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 918aa    MW: 100845 Da    PI: 6.6252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02319-augustus-gene-0.30-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.2e-18333432198
                                                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEE CS
                                             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryv 60 
                                                    f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yv
  maker-scaffold02319-augustus-gene-0.30-mRNA-2 333 FEKMLSASDAGRIGRLVLPKACAEAYfpAISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYV 396
                                                    89**************************666667778***************9989999999** PP

                                                    E-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                             B3  61 ltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                    l+ G     ++ +L++gD+v+F++++  e++l +++++
  maker-scaffold02319-augustus-gene-0.30-mRNA-2 397 LE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMGFRK 432
                                                    *9.********************876.77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-28325436IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18330432IPR015300DNA-binding pseudobarrel domain
CDDcd100174.36E-21331432No hitNo description
PROSITE profilePS5086311.138333434IPR003340B3 DNA binding domain
PfamPF023621.8E-15333432IPR003340B3 DNA binding domain
SMARTSM010191.3E-18333434IPR003340B3 DNA binding domain
PROSITE profilePS5105013.886594644IPR011124Zinc finger, CW-type
PfamPF074964.4E-11599641IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MASSNSKKTC MNVLCDASTS ADSKKGWALR SGDFAKLCDK CGSVYEQSIF CDVYHSKDSG  60
WRECTSCGKR LHCGCITSIS LVELLDCGGV SCINCAKNSG LVPISSNEKL DGFGTSKVDN  120
VNELHPSPMD TQLDGNGIEK LKLMQLSNNF DGNGLRHLLQ SHNADTIGSF GKLKEEEVFP  180
SVGEIGTACF SNFNQACNGS SNTTKPDMYK ANMGAKDIYE SLPQTNLSMT LGAPSGNSSP  240
LPSAVADERE NRKTSSPFLQ GPRSRHLLPK PPRSALAGGL EANAGMVSQI RVARPPAEGR  300
GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKMLSAS DAGRIGRLVL PKACAEAYFP  360
AISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRM  420
DPEGKLIMGF RKASNSVAMQ DTYPSAIPNG AHSSETLFSG IFENLPIISG YSGLLQSLKG  480
TADPNLNALS KHLSSATGDI SWHKSEKLED RTREGLLLPP ERKKARNIGS KSKRLLIDSQ  540
DVLELKLTWE EAQDLLYPPP TFKPSIVMIE DHEFEEYEEP PVFGKRSIFV ARSTGGQEQW  600
AQCDSCSKWR RLPVDILIPP KWTCADNAWD QNRCSCSAPD ELNPRELENL LRLNREFKKR  660
RTMTSNRPNQ GHESSGLDAL ANAAILGDSV GDPGTTSVAT TTKHPRHRPG CSCIVCIQPP  720
SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI AQRNQQTWGS RDEAEVDSTS  780
RHASSHLDPS ENEARSANEL ESKSQSKLVD TGKGHLDLNC HPDQEEELQA GSKRMSMMSL  840
LQEASLPLET YLKQNGLTLT SLITEQQASS ASQIPPHASN ENEGQLNEDC CFVSAEQERE  900
GGGEEDCGPD LSQNDAQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-683114402131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1738749KRRFKTLMMRKK
2738751KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898449.10.0B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2N9HW390.0A0A2N9HW39_FAGSY; Uncharacterized protein
STRINGEOY044560.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]