PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02141-snap-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 453aa    MW: 51166.2 Da    PI: 10.0754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02141-snap-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-17167264198
                                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHH CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWk 66 
                                                ff+v +++++++ grl ++ +fa+++  k++   +++l  ++   W++++++r ++ +    + +GWk
  maker-scaffold02141-snap-gene-0.26-mRNA-1 167 FFTVVMQPSYFQDGRLNISCNFANKYLRKTN--NDIILWVSDEGNWSIRVRFRESRTGtrAEFCRGWK 232
                                                8999**********************65544..4788888889999999988555555336777**** PP

                                                HHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                                         B3  67 eFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                                                 F ++n+Lk+gD++vF+l+++ +   ++v +f+
  maker-scaffold02141-snap-gene-0.26-mRNA-1 233 AFTEDNNLKVGDVCVFELINSiE-VAFKVAIFQ 264
                                                ******************98844.447777776 PP
2B346.66.3e-15345449197
                                                EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTE.E CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgr.y 59 
                                                f  ++ ps+   +g + +p+ f+ ++        ++ k     +++ +   + W vkl+   + g+ y
  maker-scaffold02141-snap-gene-0.26-mRNA-1 345 FMVTMRPSYLCGKGHMHVPRGFM-NYlpkegfikEYAKGI-ARIVMLQVADQLWPVKLSSYICAGAaY 410
                                                67788999999999999*****9.6679998886444444.47999999*********776666667* PP

                                                EE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE CS
                                         B3  60 vltkGWkeFvkangLkegDfvvFkld.grsefelvvkvf 97 
                                                 +++GW+ Fv++n L++gD++vF+l+  r++  ++v++f
  maker-scaffold02141-snap-gene-0.26-mRNA-1 411 QFSSGWSAFVRENTLQVGDVCVFELVmMRDDVVFKVHIF 449
                                                ************************873336666677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-44893IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-23161265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-23161264IPR015300DNA-binding pseudobarrel domain
CDDcd100176.93E-19166263No hitNo description
PfamPF023625.1E-15167264IPR003340B3 DNA binding domain
SMARTSM010194.7E-13167266IPR003340B3 DNA binding domain
PROSITE profilePS5086313.507167266IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-20337450IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-20338450IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-20343450No hitNo description
PfamPF023624.9E-13345449IPR003340B3 DNA binding domain
SMARTSM010192.6E-9345452IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929345452IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MELVYPSLLV CFRLSTSLAK KGCGTLTVQS HVKKNMKKKK TALANRWTWY YVTCSSHRVP  60
RKFISKYGGG LSNAAYLKLP HGAEWKVELT DGDGEGDPHF RAEVTKATGT ILEKSKMNAG  120
LPSKAEECSG TTRCLKLEVI EKMQPLSASV KDRALYRARV FESRNPFFTV VMQPSYFQDG  180
RLNISCNFAN KYLRKTNNDI ILWVSDEGNW SIRVRFRESR TGTRAEFCRG WKAFTEDNNL  240
KVGDVCVFEL INSIEVAFKV AIFQAGKDID CPVLNVSTHV GGGNRGPKSD CSLDDYPSKE  300
GGRGRSTSQR CLKVKAFQKK KELNIKGRAR TIERARAFKS QNPFFMVTMR PSYLCGKGHM  360
HVPRGFMNYL PKEGFIKEYA KGIARIVMLQ VADQLWPVKL SSYICAGAAY QFSSGWSAFV  420
RENTLQVGDV CVFELVMMRD DVVFKVHIFK CPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-2114245323146B3 domain-containing transcription factor VRN1
4i1k_B1e-2114245323146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891771.11e-122B3 domain-containing transcription factor VRN1-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-25B3 family protein