PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02002-augustus-gene-0.33-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Nin-like

Protein Properties

Length: 1034aa MW: 114428 Da PI: 5.2366

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02002-augustus-gene-0.33-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.9e-29	633	683	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ maker-scaffold02002-augustus-gene-0.33-mRNA-1 633 EKSISLEVLQQYFSGSLKEAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 683 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.314	622	703	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-26	636	683	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.86E-22	932	1025	No hit	No description
PROSITE profile	PS51745	22.618	939	1021	IPR000270	PB1 domain
SMART	SM00666	1.2E-26	939	1021	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.4E-26	939	1020	No hit	No description
CDD	cd06407	6.15E-36	940	1020	No hit	No description
Pfam	PF00564	7.3E-19	940	1020	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MAEAEEEKNS IFPMTQKSTD HQNIEPFMDF EDLDIGSWPL DQVSFFNDIN GNNNYQLQPL 60 SPLLISNSDH SYSSLWALAD ENEDVAQPSS APLELSSQIA LSRFRKKGVE GEVMDSRFTW 120 CVDNVPIEGK SNETTGWDGT PYLETEKPME KDDTMRFPSP HVGQLPLDNP DGYFVFKERM 180 MQALRHFKDM TEQNVLAQIW APVKDGSRYV LTTSGQPFLI GTLGNGLHQF RAASVMYKFA 240 VGEDGALGLP GRVFRQKFPE WTPNVQYYSC KEYPRRVHAQ CFNVQGSLAL PVFEPSGQSC 300 VGVVELIMTS SKINYAPEVD KVCKALEAVN LRSSEILDHP NTQIYNEGRQ NALAEILEIL 360 AVVCEAHKLP LAQTWVPCEN RSVLAHGDAL KKSCASLDGS CMGQVCMSTT DVAVYVVDPH 420 MCGFREACIE HHLQKGQGVA GRAFLSHNSC FCGNITQFCK TEYPLVHYAR MFGLTSCFAI 480 CLRSTHTGDD DYILEFFLPP SITDLHEQQI LLGSLLEMMK QHFQSLKIAS GIELQGEVSV 540 EIIQVSTDGI VDSRLESVQI NHSMKSPPGP DGLLIVEDMV QLDSSQQQLM VHSNDINNKG 600 IVAGNAGGRL DQFSSLENAD MKKMSERRRR KSEKSISLEV LQQYFSGSLK EAAKSLGVCP 660 TTMKRICRQH GISRWPSRKI NKVNRSLSKL QRVIDSVQCA EGTFGLGSLT TSQMPVAVGS 720 HPSSLSRSNK QTSPSFKVSE PQEKNGSSTC IMLDEQAAID DQLLRGRMLS PQKVIHDRSR 780 SPPEHGKSPN SSKTRSRSCE ESAGTPNSQG SCQGSPPNES TLAEHPYVSA VNERYVKVEG 840 SPGSPYQLTA VPNISPTNSI PDAFLMTEPQ ELFGGILIED SGSSIDSRNL CPSVADAMVN 900 EQVPEFCSTN PPCPSMASNQ PIPFVHKMPH VTARNEMKSV IIKATYGEDI IRFRISLNSG 960 MLELKEEVAK RLKLEVGTFE IKYLDDDHEW ILIACDADLQ ECMDISRSAG SNMIRLLVQD 1020 VMPNLGSSWE SSGD

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MAEAEEEKNS IFPMTQKSTD HQNIEPFMDF EDLDIGSWPL DQVSFFNDIN GNNNYQLQPL  60
SPLLISNSDH SYSSLWALAD ENEDVAQPSS APLELSSQIA LSRFRKKGVE GEVMDSRFTW  120
CVDNVPIEGK SNETTGWDGT PYLETEKPME KDDTMRFPSP HVGQLPLDNP DGYFVFKERM  180
MQALRHFKDM TEQNVLAQIW APVKDGSRYV LTTSGQPFLI GTLGNGLHQF RAASVMYKFA  240
VGEDGALGLP GRVFRQKFPE WTPNVQYYSC KEYPRRVHAQ CFNVQGSLAL PVFEPSGQSC  300
VGVVELIMTS SKINYAPEVD KVCKALEAVN LRSSEILDHP NTQIYNEGRQ NALAEILEIL  360
AVVCEAHKLP LAQTWVPCEN RSVLAHGDAL KKSCASLDGS CMGQVCMSTT DVAVYVVDPH  420
MCGFREACIE HHLQKGQGVA GRAFLSHNSC FCGNITQFCK TEYPLVHYAR MFGLTSCFAI  480
CLRSTHTGDD DYILEFFLPP SITDLHEQQI LLGSLLEMMK QHFQSLKIAS GIELQGEVSV  540
EIIQVSTDGI VDSRLESVQI NHSMKSPPGP DGLLIVEDMV QLDSSQQQLM VHSNDINNKG  600
IVAGNAGGRL DQFSSLENAD MKKMSERRRR KSEKSISLEV LQQYFSGSLK EAAKSLGVCP  660
TTMKRICRQH GISRWPSRKI NKVNRSLSKL QRVIDSVQCA EGTFGLGSLT TSQMPVAVGS  720
HPSSLSRSNK QTSPSFKVSE PQEKNGSSTC IMLDEQAAID DQLLRGRMLS PQKVIHDRSR  780
SPPEHGKSPN SSKTRSRSCE ESAGTPNSQG SCQGSPPNES TLAEHPYVSA VNERYVKVEG  840
SPGSPYQLTA VPNISPTNSI PDAFLMTEPQ ELFGGILIED SGSSIDSRNL CPSVADAMVN  900
EQVPEFCSTN PPCPSMASNQ PIPFVHKMPH VTARNEMKSV IIKATYGEDI IRFRISLNSG  960
MLELKEEVAK RLKLEVGTFE IKYLDDDHEW ILIACDADLQ ECMDISRSAG SNMIRLLVQD  1020
VMPNLGSSWE SSGD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900758.1	0.0	protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2N9H8K0	0.0	A0A2N9H8K0_FAGSY; Uncharacterized protein
STRING	EOY25090	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]