PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01877-snap-gene-0.19-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Trihelix

Protein Properties

Length: 978aa MW: 109269 Da PI: 7.5887

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01877-snap-gene-0.19-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.9	7.3e-10	214	278	16	81
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 ++e+ +rgk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y maker-scaffold01877-snap-gene-0.19-mRNA-1 214 QLESGQSRGKTRADKDKEVADFLQRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 278 45556668999*******************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	9.8E-13	815	962	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.1E-5	818	966	No hit	No description
CDD	cd00180	7.82E-10	823	962	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence Send to blast
MGDKGDTTKK QPQQPPQHPQ QKQISTSPKD PLEESTESRP HHHQQSPPVV VAKGASPFIS 60 APLYVPSGAT SSPFEQQFEA VNPKRPRYTG QWKLLPSPTS QQKQTQLAML SSESSPSPTT 120 HATNPQTQQH HTTAASSSDT ASSPSHSPMP SMSAASGQDT DKLEGEQAHH QIRKGKYVSP 180 VWKPNEMLWL ARAWRIQYQG GSDMGSGSSS RAEQLESGQS RGKTRADKDK EVADFLQRHG 240 VNRDAKTAGT KWDNMLGEFR KVYEWERGGE REQVGKSYFR LSPYERKLHR LPASFDEEVF 300 EELSQFMGSR MRSSPSRGSL GIVAGDDSRT VLTGTRALPP PPPFKEDELP LSARAKQLVM 360 TSGNEPLFQG TRGTLLGFES PLEIVGASSS SLSKEFRRIG KIRMTWEESV SLWAEEGEHH 420 RGRVRLQGSS FLNADELTFF DDSTVPCTME TFEDGPLKGF SVDRFVSGQQ VKVFGRRKAS 480 STASSAIPPW EYQDPTEYYV GCLRVPPPTL PSLFELSSHL QEPPPEELRF PLRRDVYRDL 540 PLGKEHFFAI STELLDCRNF IYDILSPIIR TNPSISSATF TSRDSFIGLW DDCINRIVSK 600 FCSVEMVVIR KPSSASTEML QDQWPNVTGF VRNFCLWRGE EADKSRDEAL DPSSSIAEKL 660 LWTYMDLPYI LGYYAVGYLV TFCALTRAQD RIIRTDLCSL DLSSPVERLK ALVPCYRIAG 720 LLPLLADRCF NNINNSGGNY KQLFAYSDFE RLDLGNGNFI EMTPNTVTRI FSSKRRWTAV 780 KEIYDFLDQR IPHAEYIFRS SEKDLALVFK PRGCKFKPTN CDQLVEALKY VTKALVALHD 840 LSFMHRDLGW DKVMRRSDRE NEWFVCGFEE AVGAPQIYPH GAAAASGGIG DVAARGRHAS 900 EMGRGLHGVK VDVWGVGYLV KTSGLGSNGV VGGVPKMLRE LQNRCLDQNP EQRPTAADCY 960 HHLLQLQSSL SASSGGGY

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence Send to blast

MGDKGDTTKK QPQQPPQHPQ QKQISTSPKD PLEESTESRP HHHQQSPPVV VAKGASPFIS  60
APLYVPSGAT SSPFEQQFEA VNPKRPRYTG QWKLLPSPTS QQKQTQLAML SSESSPSPTT  120
HATNPQTQQH HTTAASSSDT ASSPSHSPMP SMSAASGQDT DKLEGEQAHH QIRKGKYVSP  180
VWKPNEMLWL ARAWRIQYQG GSDMGSGSSS RAEQLESGQS RGKTRADKDK EVADFLQRHG  240
VNRDAKTAGT KWDNMLGEFR KVYEWERGGE REQVGKSYFR LSPYERKLHR LPASFDEEVF  300
EELSQFMGSR MRSSPSRGSL GIVAGDDSRT VLTGTRALPP PPPFKEDELP LSARAKQLVM  360
TSGNEPLFQG TRGTLLGFES PLEIVGASSS SLSKEFRRIG KIRMTWEESV SLWAEEGEHH  420
RGRVRLQGSS FLNADELTFF DDSTVPCTME TFEDGPLKGF SVDRFVSGQQ VKVFGRRKAS  480
STASSAIPPW EYQDPTEYYV GCLRVPPPTL PSLFELSSHL QEPPPEELRF PLRRDVYRDL  540
PLGKEHFFAI STELLDCRNF IYDILSPIIR TNPSISSATF TSRDSFIGLW DDCINRIVSK  600
FCSVEMVVIR KPSSASTEML QDQWPNVTGF VRNFCLWRGE EADKSRDEAL DPSSSIAEKL  660
LWTYMDLPYI LGYYAVGYLV TFCALTRAQD RIIRTDLCSL DLSSPVERLK ALVPCYRIAG  720
LLPLLADRCF NNINNSGGNY KQLFAYSDFE RLDLGNGNFI EMTPNTVTRI FSSKRRWTAV  780
KEIYDFLDQR IPHAEYIFRS SEKDLALVFK PRGCKFKPTN CDQLVEALKY VTKALVALHD  840
LSFMHRDLGW DKVMRRSDRE NEWFVCGFEE AVGAPQIYPH GAAAASGGIG DVAARGRHAS  900
EMGRGLHGVK VDVWGVGYLV KTSGLGSNGV VGGVPKMLRE LQNRCLDQNP EQRPTAADCY  960
HHLLQLQSSL SASSGGGY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900281.1	0.0	uncharacterized protein LOC112012133
TrEMBL	A0A2N9EMY7	0.0	A0A2N9EMY7_FAGSY; Uncharacterized protein
STRING	EOY23024	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-08	Trihelix family protein