PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01594-augustus-gene-0.20-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Trihelix

Protein Properties

Length: 444aa MW: 50573.8 Da PI: 6.3688

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01594-augustus-gene-0.20-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86	4.7e-27	84	165	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k maker-scaffold01594-augustus-gene-0.20-mRNA-1 84 WVQDETRSLISLRREMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAK 147 ************************************************************** PP trihelix 66 egekkrtsessstcpyfdqle 86 +++++ s +++y++++e maker-scaffold01594-augustus-gene-0.20-mRNA-1 148 HQDRGS---GSAKMSYYKEIE 165 84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-5	74	145	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.687	76	140	IPR017877	Myb-like domain
SMART	SM00717	6.3E-5	80	142	IPR001005	SANT/Myb domain
CDD	cd12203	1.69E-29	82	147	No hit	No description
Pfam	PF13837	3.1E-21	83	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MYLSEKPRPI DLYKEEGARD MMIEVVSNGG GDLGPHHAPQ PHPHAHAHSH HQHQQMILGD 60 SSGGDEDHEV EVEVKAPKKR AETWVQDETR SLISLRREMD GLFNTSKSNK HLWEQISSKM 120 REKGFDRSPT MCTDKWRNLL KEFKKAKHQD RGSGSAKMSY YKEIEEILRD RSKNAQYKSP 180 TPPKVDTYMQ FSDKGTVFEL CFWQNWKNQD ISSTLLGVGI NVFVNPVLVI YGFGVLCSCI 240 EDAGISFGPV EATGRPTLNL ERRLDHDGHP LAITTADAVA ASGVPPWNWR ETPGNGGESQ 300 SYCGRVISVK WGDYTRRIGI DGSTDAIKEA IRCAFRLRTK RAFWLEDEDQ IIRSLDRDMP 360 LGNYMLHLDE GLAIKVCLYD ESDHIPAMHT EDKIFYTEDD YRNFLSQRGW SCLRELDGYR 420 NIDSMDDLRP GAIYRGGAIY RGES

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MYLSEKPRPI DLYKEEGARD MMIEVVSNGG GDLGPHHAPQ PHPHAHAHSH HQHQQMILGD  60
SSGGDEDHEV EVEVKAPKKR AETWVQDETR SLISLRREMD GLFNTSKSNK HLWEQISSKM  120
REKGFDRSPT MCTDKWRNLL KEFKKAKHQD RGSGSAKMSY YKEIEEILRD RSKNAQYKSP  180
TPPKVDTYMQ FSDKGTVFEL CFWQNWKNQD ISSTLLGVGI NVFVNPVLVI YGFGVLCSCI  240
EDAGISFGPV EATGRPTLNL ERRLDHDGHP LAITTADAVA ASGVPPWNWR ETPGNGGESQ  300
SYCGRVISVK WGDYTRRIGI DGSTDAIKEA IRCAFRLRTK RAFWLEDEDQ IIRSLDRDMP  360
LGNYMLHLDE GLAIKVCLYD ESDHIPAMHT EDKIFYTEDD YRNFLSQRGW SCLRELDGYR  420
NIDSMDDLRP GAIYRGGAIY RGES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-50	78	163	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00141	DAP	Transfer from AT1G13450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023904917.1	0.0	trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A314ZGR1	0.0	A0A314ZGR1_PRUYE; Trihelix transcription factor GT-1-like isoform X2
STRING	GLYMA11G37390.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]