PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01285-snap-gene-0.41-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 544aa    MW: 60376.5 Da    PI: 6.5607
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01285-snap-gene-0.41-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.31.2e-14741135
                                       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                               C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  maker-scaffold01285-snap-gene-0.41-mRNA-1  7 CCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41
                                               99**************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.0E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-10545No hitNo description
CDDcd002029.64E-16654No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PfamPF139192.3E-8283369IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RYSRVKSISV NKNKEVKLLK RKQNSDNMMV GVGAPDYNQG FRKVIDEDTS NRSSSGSAIS  120
NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCVSRP KQSPVEKLTK DLHTILHEQQ  180
SSYFSASSED DLLFDSEIPM VSVEIGHGSV LIRHPSSIAR EEESEASSLS VENKQFPTNE  240
AYSHYAITSV HNGSKGVNFP SPGVEIIKNH AGQGMQPEHL KRDKSQNENL QILASHNSPL  300
CNIDLNDVLN FEELMRNLTN EEQQQLLKYL SPVDTLKVPD SLKSTFDSPQ FRENLIYFQQ  360
LLVEGVFDNS FSGAKSEDCK NLTSLAICNS LKCKWVESYH LLKLQKYKNS SGGSVLGPNA  420
TVSSNFINVK RLRDSQSQNL PEVKTTMKCP KRMIVKASYE NKELIDNDSS CFSPRSLFAL  480
PTEGSSLTLD SFNFVEESSD QELLLDVPSN GSFPQAELLH PSLSFDGQQA STSSSSIYQH  540
LVRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902988.10.0GATA transcription factor 26
SwissprotQ8W4H11e-157GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2N9G4L30.0A0A2N9G4L3_FAGSY; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-156GATA transcription factor 26