PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00851-snap-gene-0.52-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HB-PHD
Protein Properties Length: 1094aa    MW: 119853 Da    PI: 4.9927
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00851-snap-gene-0.52-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.77e-129159561152
                                                HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                                   Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                                 +++L + F++n+yp ++++e LA++lgLt ++V+ WF N R
  maker-scaffold00851-snap-gene-0.52-mRNA-1 915 VTQRLYKSFKENQYPERATKESLAQELGLTFQKVSKWFENAR 956
                                                6899************************************99 PP
2PHD37.36.4e-13554609151
                                                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                                        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                                +C+ Cg+    ++++++lCdg C++ fH+ Cl+++l se++p +   wlC+ C++k
  maker-scaffold00851-snap-gene-0.52-mRNA-1 554 FCAKCGSkdLSANNDIILCDGaCDRGFHQHCLEPPLLSEDIPPDdeGWLCPGCDCK 609
                                                699***977677********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.66E-13544612IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.2E-13550608IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.074552609IPR019787Zinc finger, PHD-finger
PfamPF006281.9E-10554609IPR019787Zinc finger, PHD-finger
CDDcd155043.20E-28554606No hitNo description
SMARTSM002491.2E-9554607IPR001965Zinc finger, PHD-type
PROSITE patternPS013590555606IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.5E-13877956IPR009057Homeodomain-like
SMARTSM003897.0E-10899966IPR001356Homeobox domain
PROSITE profilePS5007112.503902962IPR001356Homeobox domain
SuperFamilySSF466892.27E-11910966IPR009057Homeodomain-like
PfamPF000462.1E-9914956IPR001356Homeobox domain
CDDcd000861.40E-10916956No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MNVAEVGHME VSSPAVSQTG KSACPEQSES GQIHGSVFSE ASELRHQLGS ETIRNEQGEI  60
SFSEIVTESS LTEPLGPPSE DVSKSGQAGE DSSPLQITSE NLYDSNSASL SEPSYQKHQL  120
GSELVHKKPV ETSSAVSSCT DKKKLQPSYE NVTNSSLAGP LQLHPLDVSE SIETGKILST  180
QQIILEQHDS DSGVLLGEPS EGKDQLASGP VQTGSVKTST VSSCVADKQL HEPLGAIAAV  240
SGCVNKQMQS FPDSVAKNSV TDSVELLCEN VSRDSQKGKR SRSQPSISEQ TCEYGSGTGE  300
SSEQYQLDSE FVHNLPVETN TVVPTCVVIE QSEPHLEATK KSSLSEQTGP PPADSNKDLG  360
TEPRGPPPDD VANNSTLELL ETPPKKTIKN PRQLSRRDKR TPNSLKKKYK LRSLVASDRV  420
LRSRTPGKPK APESSNNSAH VSTVEEKKKK IKKKRGKRVV ADEFSRIKSR LRYLLNRISY  480
EQSLIEAYSS EGWRGSSLEK LKPEKELQRA TSEIFRRKLK IRDLFQHIDL LCAEGTLPES  540
LFDSEGQIDS EDIFCAKCGS KDLSANNDII LCDGACDRGF HQHCLEPPLL SEDIPPDDEG  600
WLCPGCDCKD DCIDTLNEFQ GTNLSITDSW EKVYPEAAAA AGHNQDHNFG LPSDDSDDND  660
YNPCEPDDEN VEGDESSSDE SEYASAAEDL EAPAEELEAP PNEEQYLGLP SDDSEDDEYD  720
PDAPDLDEKD MKESSSSDFT SDSEDFAAVL DENRPLGGSG GKRSKTGGKK QSLNDELLST  780
IDTQPGQDGS APVSGRRQVE RLDYKKLHDE EYGNISTDSS DDEDWNGIAA PKKRKRTTGE  840
VAPVSPNGRT PNGKNNKEIK HNLKEIDRAP KRNTRQKANV KDTNNSPMKS PNGSGKSGSI  900
GKRTTSAYKK LGEAVTQRLY KSFKENQYPE RATKESLAQE LGLTFQKVSK WFENARWSFN  960
HSSHMEAHMA NSASKKDTPS PQKNKKTLEP VPGMFTRDST CNGAPNKALP KDNIIMPEHS  1020
GNSRDSELVT QERNERKSTT RSSRKRKGRS ESDCQASGLD LRIEETKKPP AKSPKANEVQ  1080
SGGGMMTRRR KSLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1831836KKRKRT
210861091TRRRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905204.10.0pathogenesis-related homeodomain protein
TrEMBLA0A2I4DQI30.0A0A2I4DQI3_JUGRE; homeobox protein HAT3.1
STRINGXP_008338253.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-100Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain