PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00541-snap-gene-1.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 838aa    MW: 92209.4 Da    PI: 6.7596
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00541-snap-gene-1.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-19256356199
                                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TT CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkG 64 
                                                f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G
  maker-scaffold00541-snap-gene-1.11-mRNA-1 256 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRIQDVKGNEWTFQFRFwpNNNSRMYVLE-G 322
                                                99**************************555556677***************9989999999***9.* PP

                                                HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                         B3  65 WkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                     ++ +L++gD+v+F++++  +++lv++++r+
  maker-scaffold00541-snap-gene-1.11-mRNA-1 323 VTPCIQSMQLRAGDTVTFSRID-PGGKLVMGFRRA 356
                                                *******************987.899899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-30252358IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-20253355IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-23254355No hitNo description
PfamPF023621.6E-16256356IPR003340B3 DNA binding domain
SMARTSM010193.8E-23256357IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11256357IPR003340B3 DNA binding domain
PROSITE profilePS5105015.116520570IPR011124Zinc finger, CW-type
PfamPF074961.7E-11525567IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MLRVKRPIRT NGREAGLYDP VDSPIFATSA DYMLDTDFYY SFDAQIWRGE IPNGFGSFTL  60
NNAGDSLSSP FEKNLVSESV NEGKLMQLCR IAEDNAPNLL PQSQTGEANA SQVGTGFSNV  120
TQPSVGSVTF AKSDSSRQLL EGKDMHESLT QPSLSMTLGT PNFMIPFSGG PLDEQSKTHS  180
PLQKGQRSRP ILPKPLKSGL SASSETNKGV VQMRIARPPA EGRGKNQLLP RYWPRITDQE  240
LEKLSGDLNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQSEG LPLRIQDVKG  300
NEWTFQFRFW PNNNSRMYVL EGVTPCIQSM QLRAGDTVTF SRIDPGGKLV MGFRRASNTV  360
DAQDAHTSAL PNGTPSGETS FSGVIENLPS GNGYSGLFQT MKGSTEPHLI LSENLHSGDG  420
DIRLHTSDSH GLGTNEDSLQ QPMPISEKKR TRNIGAKSKR LLMNSEEALE LRLTWEEAQD  480
LLRPPPSVKP SVVTIEDHEF EEYDEPPVFG KRTIFTARPS RGQEQWAQCD DCSKWRRLPV  540
EVLLPPKWTC SENEWDSSRC SCSVPEEISQ KELENLLRAS KAPSISSPDF KKRRIVGSHK  600
SAQEREPSGL DALASAAVLG DNVGDSVEPS VGATTKHPRH RPGCSCIVCI QPPSGKGKHH  660
PTCTCNVCMT VKRRFKTLML RKKKRQSERE AETAQKDHKH PRNKSEMNGK PKDAQLPTNH  720
LENEASQSRI KAEVAGTSNG QIDLNSHPNR EDMQLDLDVP GMSLLSLVQA ASIPLEDYIE  780
QRMTSFTCDQ QGSVGSGIHP QVSGENKKRL SDEGSLASGV WEHESRGDGG SYHESNLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-712343632131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1671682KRRFKTLMLRKK
2671684KRRFKTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415343e-45AM441534.1 Vitis vinifera contig VV78X035471.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893161.10.0B3 domain-containing transcription repressor VAL1 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2N9J1R40.0A0A2N9J1R4_FAGSY; Uncharacterized protein
STRINGXP_010108467.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]