PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00431-snap-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 313aa    MW: 35917.1 Da    PI: 6.3449
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00431-snap-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.36.2e-1679163286
                                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikege 68 
                                                Wt++e+ +L++a  ++  + +r++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k ++
  maker-scaffold00431-snap-gene-0.27-mRNA-1  79 WTERETFVLLDAWGDRFLHRGRKSLRSEEWQEVAEKVSEIsKIERTDTQCRNRLDTLKKKYKKEKMRM 146
                                                *************************************775278************************* PP

                                   trihelix  69 kkrtsessstcpyfdqle 86 
                                                 + t ++ s+++yf++++
  maker-scaffold00431-snap-gene-0.27-mRNA-1 147 AE-TGDAMSKWVYFKKMD 163
                                                *9.688888********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2178164No hitNo description
PROSITE profilePS500906.31979136IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-494148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDTEDDARY PPNPYAVNYQ QGYGSSSRQK LSVRNAPYSR PSLVSSYEFA PRVPPPSAAA  60
PPPAAPKPSF GGRNSLTDWT ERETFVLLDA WGDRFLHRGR KSLRSEEWQE VAEKVSEISK  120
IERTDTQCRN RLDTLKKKYK KEKMRMAETG DAMSKWVYFK KMDVLLSSPP QQAGLSCGMD  180
SGEYVFMNPK VYLNRANGLD EMRDSPGNSE PTDREEDDSD GLPPKKRKFG RVNDEGSSFR  240
LLADSIHKFS EIYEKIETNK RQQLVELEKM RMDFHRELEK QKRQILERAQ TEIAKIRQGD  300
DEENDISAEN ASG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900184.11e-175trihelix transcription factor ASIL1-like
TrEMBLA0A2I4GA851e-162A0A2I4GA85_JUGRE; trihelix transcription factor ASIL2-like
STRINGXP_006465549.11e-155(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-73Trihelix family protein