PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00304-augustus-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 556aa    MW: 64085.6 Da    PI: 6.0024
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00304-augustus-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix957.1e-30112197187
                                       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykk 63 
                                                    rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk
  maker-scaffold00304-augustus-gene-0.31-mRNA-1 112 RWPRQETLTLLEIRSRLDSKFKETNQKGPLWDEVSRIMaEEHGYQRSGKKCKEKFENLYKYYKK 175
                                                    8*************************************999*********************** PP

                                       trihelix  64 ikegekkrtsessstcpyfdqlea 87 
                                                    +keg+ +r  ++ +++++f+qlea
  maker-scaffold00304-augustus-gene-0.31-mRNA-1 176 TKEGKAGR--QDGKHYRFFRQLEA 197
                                                    ******98..55667*******85 PP
2trihelix66.17.4e-21404477173
                                       trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                                                    rWt+ ev  Li++r+++e r+++ g l+++lWee+++km + g+ rs + Ckekwe+++ +y k
  maker-scaffold00304-augustus-gene-0.31-mRNA-1 404 RWTEMEVSSLIQLRTSLELRFQEsGYLEEGLWEEIAAKMGSLGYDRSMVACKEKWESISIYYNK 467
                                                    8*********************8467************************************** PP

                                       trihelix  64 ikegekkrts 73 
                                                    + e +kk ++
  maker-scaffold00304-augustus-gene-0.31-mRNA-1 468 TMECNKKSKE 477
                                                    *****99743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.65109172IPR001005SANT/Myb domain
PfamPF138379.8E-21111198No hitNo description
CDDcd122033.67E-21112177No hitNo description
PROSITE profilePS500906.667112170IPR017877Myb-like domain
PROSITE profilePS500907.422397462IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.5E-5399461IPR009057Homeodomain-like
SMARTSM007170.0085401464IPR001005SANT/Myb domain
PfamPF138371.7E-15403492No hitNo description
CDDcd122034.93E-21403468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGDQYGLPDL RQFMAGRTHF SGMTQPTEPF FLQRNIVAAP PQLHYEPIMV GHEVLPRGLQ  60
VGFGHDSSTT SAATPNSTAT ITTTTSSAAT TTLCGPQIES GWMGYDAIGN TRWPRQETLT  120
LLEIRSRLDS KFKETNQKGP LWDEVSRIMA EEHGYQRSGK KCKEKFENLY KYYKKTKEGK  180
AGRQDGKHYR FFRQLEAIYG EASNNHASVS NSLPYHQSTR NNVIQQENQE VVQNQRLCTE  240
SLSTFSNSSE FETSSSENNN DDDLSAIAFM MNQSMEKQKV MNERQSYQRV KKSWKAKVEE  300
FVDSQMRKIM DTQEAWMDRM LKTIENREQE RVSKEEEWRK QEAARFDQEV HELWAKERAW  360
VEARDAALME ALKKFIGKGL GVSPMAVETQ SHEENQVETI NNNRWTEMEV SSLIQLRTSL  420
ELRFQESGYL EEGLWEEIAA KMGSLGYDRS MVACKEKWES ISIYYNKTME CNKKSKEDLD  480
LTTSSSYFQL LNSYQGQEIP KHRPESMGLQ LMDEGLPPSS SNVGTNEVHR SCFQNEEEKL  540
WEKYGVKLNK GKNQQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941223e-63BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023870498.10.0trihelix transcription factor PTL-like
RefseqXP_023870504.10.0trihelix transcription factor PTL-like
TrEMBLA0A2N9HX310.0A0A2N9HX31_FAGSY; Uncharacterized protein
STRINGPOPTR_0008s02580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-105Trihelix family protein