PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00051-augustus-gene-1.41-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 787aa    MW: 85042.5 Da    PI: 5.1458
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00051-augustus-gene-1.41-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.21.2e-2996180187
                                       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                                                    rW++qe+laL+++r+em+  +r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++
  maker-scaffold00051-augustus-gene-1.41-mRNA-1  96 RWPRQETLALLRIRSEMDAVFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRT 159
                                                    8*************************************************************** PP

                                       trihelix  65 kegekkrtsessstcpyfdqlea 87 
                                                    keg+ +r++++s  +++f++lea
  maker-scaffold00051-augustus-gene-1.41-mRNA-1 160 KEGRAGRQDGKS--YKFFSELEA 180
                                                    ******866665..******985 PP
2trihelix107.87.4e-34510595187
                                       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                                                    rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m++ g++r+pk+Ckekwen+nk+ykk+
  maker-scaffold00051-augustus-gene-1.41-mRNA-1 510 RWPKVEVLALIKLRSGLEQRYQEAGPKGPLWEEISAGMHRMGYKRNPKRCKEKWENINKYYKKV 573
                                                    8*************************************************************** PP

                                       trihelix  65 kegekkrtsessstcpyfdqlea 87 
                                                    ke++kkr +e+ +tcpyf++l+a
  maker-scaffold00051-augustus-gene-1.41-mRNA-1 574 KESNKKR-PEDAKTCPYFHELDA 595
                                                    ******8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.2293155IPR001005SANT/Myb domain
CDDcd122033.05E-2895160No hitNo description
PROSITE profilePS500906.56295153IPR017877Myb-like domain
PfamPF138377.0E-2195181No hitNo description
SMARTSM007170.024507569IPR001005SANT/Myb domain
PROSITE profilePS500906.574509567IPR017877Myb-like domain
PfamPF138379.6E-24509596No hitNo description
CDDcd122039.91E-31509574No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MQQGGGGSNK AQYEMSAAGA NPNPMGMESS EQGGGGQLVV EAASPISSRP PASASASASA  60
SAAVNLDELM PLQGDEVGDE ADRAGGAAGG VGGGNRWPRQ ETLALLRIRS EMDAVFRDAT  120
LKGPLWEDVS RKLAELGYKR NAKKCKEKFE NVHKYYKRTK EGRAGRQDGK SYKFFSELEA  180
LHSSSPASSS AATTSNNASP FLISPPPATT TTNPAVAVAS STAGIGIISN PMPISSVRVT  240
QAPPPTIGIF PANPSASTAA MTAPVVSVQP PAAAVIRTTT QLPTGISFSS NSSSSSLGTN  300
DDDDDEESLE LEGEPSNVGS SRKRKRGSSS SSGTRRMMQF FENLMKQVMH KQEVMQQRFL  360
EAIEKREHDR MIRDEAWKRQ EMARLAREHE VMAQDRAISA SRDAAIVSFL QKITGQTIQL  420
PTPAPPLSFA AAPPPPPVSQ QAPIPTPTPA PAPAPPPSQS QQQQQQQVHQ HSQIFSQVVM  480
AVPEQQVPPQ AQDIIMSGGG GSFEATSSSR WPKVEVLALI KLRSGLEQRY QEAGPKGPLW  540
EEISAGMHRM GYKRNPKRCK EKWENINKYY KKVKESNKKR PEDAKTCPYF HELDALYRKK  600
ILGGGSTSGG GGTSTTFVNQ NMPQQLQETI KQDTSDAPAA AIIPTPQAQQ QPLAATTSAE  660
NKNGASTHVQ AQTQSSNVGL PEDLFGEGIG GAPKKPEDIV KELMEQQEHQ RRQQLIVEDY  720
DKIEEAESDN MDDQEEEEEE EDEDEDDDNE ELEVERKVSY KIEFQRQNTG SSNGGGNGPP  780
SFLALVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146KRNAKKCKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898839.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2I4GLZ00.0A0A2I4GLZ0_JUGRE; trihelix transcription factor GTL1-like isoform X1
STRINGcassava4.1_002081m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.13e-42GT-2-like 1