PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 660aa    MW: 75232.6 Da    PI: 7.1135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-17351011484
                                                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                                                    B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
                                                           ++l +pkkf+++ ++k   ++ +tl+ +sg +W+v+l  +  +++ ++  GW+eFvk
  augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1  35 RQLAIPKKFVDNVKKK--LPQSVTLKGPSGLTWDVEL--KTIDDTLFFNHGWQEFVK 87 
                                                           679*******777655..7788***************..99**************** PP

                                                           HHT--TT-EEEEEE CS
                                                    B3  71 angLkegDfvvFkl 84 
                                                           ++ L+e D +vF+ 
  augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1  88 DHSLEETDLLVFRK 101
                                                           ************93 PP
2B3383e-12236320390
                                                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEE CS
                                                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgry 59 
                                                            v+ p +v k+  +++p + a++h + +++++ l++   +  +W+ ++++++ +g  
  augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1 236 VVMRPTHVYKRFFVYIPLEWATNHLSLENQEIHLRF---NKDTWRARYNHNRVRGYG 289
                                                           578899***************999545455544554...559******888888888 PP

                                                           EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                                                    B3  60 vltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                                            +t+GWk+Fv +n+L+e D ++Fk  g++++
  augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1 290 GITGGWKHFVIDNNLEEFDACLFKPAGQMDG 320
                                                           9***********************8887655 PP
3B350.24.7e-16378467198
                                                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETT CS
                                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksg 57 
                                                           ffkvl     +++ +l++p  f+++++ +     + +l++++g+++ v++  ++  +
  augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1 378 FFKVL--IGDFSE-QLCIPPAFVKNFN-VR-LLSKCSLRSSTGKVYVVRVE-ERENN 428
                                                           56666..455555.5********6664.43.44599**************4.44455 PP

                                                           EEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                                    B3  58 ryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                             ++ +GW +Fvk+n L+ gDf+vFk+dg+s f  +vk++ 
  augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1 429 DLFFWGGWHDFVKDNSLDIGDFLVFKYDGNSMF--KVKIYG 467
                                                           689999***********************9999..777765 PP
4B337.34.8e-125686471599
                                                           -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                                                    B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                                                            +++pk  a e +++  ++k  +l d+sg  W v l     +g   +t+GW +F++ 
  augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1 568 YMTIPKFVAIEKDLS--SKKRAMLLDPSGSPWPVILD-LVADGFLNMTSGWPDFCRG 621
                                                           589999999888877..5568***************3.44555688*********** PP

                                                           HT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                                    B3  72 ngLkegDfvvFkldgrsefelvvkvfrk 99 
                                                           n++  gD+++F+++  +++ + v++fr+
  augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1 622 NKVGPGDTFIFEFV--TQTVMQVHIFRA 647
                                                           ************76..466779999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1921105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.29622118IPR003340B3 DNA binding domain
SMARTSM010191.1E-925118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-1830103IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-1435101IPR003340B3 DNA binding domain
CDDcd100179.68E-1436100No hitNo description
Gene3DG3DSA:2.40.330.108.0E-17232330IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.518234332IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-14234330IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.2E-11234327IPR003340B3 DNA binding domain
PfamPF023627.3E-11235320IPR003340B3 DNA binding domain
CDDcd100172.39E-12237330No hitNo description
SuperFamilySSF1019363.34E-22371471IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-21372471IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788375469IPR003340B3 DNA binding domain
CDDcd100174.11E-18376466No hitNo description
PfamPF023621.1E-13378467IPR003340B3 DNA binding domain
SMARTSM010191.1E-12378469IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-16548647IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-19550647IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.041554648IPR003340B3 DNA binding domain
SMARTSM010195.8E-7556648IPR003340B3 DNA binding domain
CDDcd100173.81E-8564646No hitNo description
PfamPF023625.5E-10568647IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MGETCKDWSK WAEGIYWDHF QTIHFSQYLL GDYDRQLAIP KKFVDNVKKK LPQSVTLKGP  60
SGLTWDVELK TIDDTLFFNH GWQEFVKDHS LEETDLLVFR KCGPTENDNG CLTKKKTREG  120
SIDDVHTPLD DGVACPSPLN YVSDDSVTVP SEQCIISLVS NKRTRKSARS VGSKEPATFG  180
EGVKSAASDD AECSPIFKNL SQGPHYSSNR RLVSEDEIKN ALLLAQAASS DDTYLVVMRP  240
THVYKRFFVY IPLEWATNHL SLENQEIHLR FNKDTWRARY NHNRVRGYGG ITGGWKHFVI  300
DNNLEEFDAC LFKPAGQMDG LTILDVSIFR VVEEISPRTL LTPPRKRGIT FGFEFVLILE  360
EFLMARKPEC YKSSRPSFFK VLIGDFSEQL CIPPAFVKNF NVRLLSKCSL RSSTGKVYVV  420
RVEERENNDL FFWGGWHDFV KDNSLDIGDF LVFKYDGNSM FKVKIYGRNA CEKDVRLAKR  480
KEEYPIPSIK KGKQIQENTI IEELKPDSYK ESSGQKAINS NKIISGCSKF GEEFINDDIK  540
ESGMKSISSF KSENSYFIAT WTWYSQYYMT IPKFVAIEKD LSSKKRAMLL DPSGSPWPVI  600
LDLVADGFLN MTSGWPDFCR GNKVGPGDTF IFEFVTQTVM QVHIFRAGAK KEAQCLGVDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914222.10.0B3 domain-containing protein REM16-like
TrEMBLA0A2N9ITR91e-168A0A2N9ITR9_FAGSY; Uncharacterized protein
STRINGXP_010089922.11e-94(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-55B3 family protein