PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold11436-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 403aa MW: 45196.9 Da PI: 4.4801 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g augustus_masked-scaffold11436-abinit-gene-0.2-mRNA-1 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.44E-31 | 44 | 101 | No hit | No description |
Pfam | PF00847 | 9.9E-14 | 45 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-35 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 45 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-19 | 45 | 102 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-27 | 45 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MARKRRASEV VEDKNSSEGS MAWDEMVKEA AAAEALGGAR RARKRFVGVR QRPSGRWVAE 60 IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPCPSSSSS SPALPSKITN 120 LLLQRLKARH SSRTALSNSS LPISLQEKQQ TEVPREEAAE FPNASFTDYL SNPEDYYTNC 180 NNFVTSTNAN ASHDYMTTNF EASFTEKEDW GQREMDFNSN WSTNVSQTCS VDYKFGGEGE 240 EDEEEAGSET GKLDFQFVDT VGTCFYSPFE IAEEIEEPVE PENCTDEPSM FRAAMKRMKY 300 ERKVSASLYA FNGISECLKL KLTSGNVLGR EMSDQLTNLQ KACNKNKEAK NEDDQEYVEM 360 MKRREDENSG SSTEMGSSSS SLSSDGELLL WSSLDLQPIC FVN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023874718.1 | 0.0 | ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A2N9GZ35 | 0.0 | A0A2N9GZ35_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_008867m | 1e-170 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-21 | related to AP2 11 |