PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold11095-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 411aa    MW: 45772.7 Da    PI: 9.6492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold11095-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20233283256
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                                            y+GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  augustus_masked-scaffold11095-abinit-gene-0.1-mRNA-1 233 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYMLRGE 283
                                                           59******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.34E-32232292No hitNo description
PROSITE profilePS5103223.235233290IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-32233292IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-23233291IPR016177DNA-binding domain
SMARTSM003808.0E-36233296IPR001471AP2/ERF domain
PRINTSPR003672.0E-11234245IPR001471AP2/ERF domain
PfamPF008472.6E-14234283IPR001471AP2/ERF domain
PRINTSPR003672.0E-11256272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEDQFPKMET FTQQELPSYM ASGSNIFGDP IMWRALTQSF CYHHGGMKSS LLASSPDRRF  60
SCWESSSSKG EASDINLPTS IPGFTKQNVH KHHTSPLLSA ASAKESFIPV NFLDTFPKLS  120
QAQASTPSSP SSLSTTSKFP NLTLFLPEHT MLYSSSPIVD SPSKNPKCES MLSSPHPSFS  180
MSQLGQVKSS KGFNDYWLST TKTQPMKYTS TGRRMQNNQV VHKTTNFSSQ GKLYRGVRQR  240
HWGKWVAEIR LPRNRTRVWL GTFDTAEEAA MAYDTAAYML RGEYAQLNFP DQKHAIKANS  300
LNGTTAALLE AKLQAISSQG INSAHKKPTE PPPKIPPKNL LSENIKIQGL SQNTSRKEWQ  360
FELESKVGSG VLIENKKTQE VLSDVDAVQL SRIPSLDMDM IWDALSVSDH L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21229290163ATERF1
3gcc_A2e-21229290163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906081.10.0ethylene-responsive transcription factor ERF062
TrEMBLA0A2N9G4S00.0A0A2N9G4S0_FAGSY; Uncharacterized protein
STRINGcassava4.1_023072m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-56ERF family protein