PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 442aa    MW: 49786.4 Da    PI: 6.8894
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-1645127591
                                                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE CS
                                                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvl 61 
                                                           l+  +  + + l++p+kf++++g +   s   tl  +sgr W v+l  rk +++ ++
  augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1  45 LMDVSIIQDKKLRIPNKFVRKFGDE--LSSVATLSVPSGRDWLVEL--RKADQKLWF 97 
                                                           55666677789***********865..7779999************..********* PP

                                                           -TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                                                    B3  62 tkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                                            +GW eFvk + + +g  ++F+++g+s+f 
  augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1  98 HDGWHEFVKHHCIHAGNLLIFRYEGNSNFD 127
                                                           ************************999883 PP
2B357.72.1e-18340428495
                                                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEE CS
                                                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryv 60 
                                                           v++ps+ +k  +l +p +fa+++  +  +s  ++l+ ++g  W v++   + ++++ 
  augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1 340 VMKPSYIHKGYLLHIPSSFAQKYL-N--RSGSIMLQISDGPWWLVRC--INEGNGTK 391
                                                           7899******************94.3..3346***************..88888899 PP

                                                           E-TTHHHHHHHHT--TT-EEEEEE-SSSE..E..EEE CS
                                                    B3  61 ltkGWkeFvkangLkegDfvvFkldgrse..felvvk 95 
                                                           l++GW+eFv +n L+egD++vF+l+++++   +l+v+
  augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1 392 LSQGWREFVLDNCLEEGDVCVFELISKEDimLKLKVT 428
                                                           ***********************99765511445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-2039136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2240135IPR015300DNA-binding pseudobarrel domain
CDDcd100177.90E-1741132No hitNo description
PROSITE profilePS5086314.28341134IPR003340B3 DNA binding domain
SMARTSM010196.2E-1042134IPR003340B3 DNA binding domain
PfamPF023621.2E-1347127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-21330431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-22331424IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-20335431No hitNo description
SMARTSM010195.2E-13336433IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562337431IPR003340B3 DNA binding domain
PfamPF023624.7E-17339428IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MNDHGLAFPV TETEQSQSTM SQLVNQSLHS SSPCPNRRAC LFYKLMDVSI IQDKKLRIPN  60
KFVRKFGDEL SSVATLSVPS GRDWLVELRK ADQKLWFHDG WHEFVKHHCI HAGNLLIFRY  120
EGNSNFDIYM FNLTACESCN IPSSSEEPNH VKQCPVSLGK VTDNASIEIL GAEEPSHGKH  180
HPVLHGKEIE DDDSIEFLGS FPPRPTWRND VSDGHVDQQK PYKSCIRTAL NDVMHSPDGD  240
NMHLAKNADT LKAKVRSTRN IGIQFNESDL TRTAGEVGSG YWDEAQQSVK RRKQSTEPTE  300
FNMEVGIPGA EVSIAVAEKR GRAIRAALRF NPGNPFCRVV MKPSYIHKGY LLHIPSSFAQ  360
KYLNRSGSIM LQISDGPWWL VRCINEGNGT KLSQGWREFV LDNCLEEGDV CVFELISKED  420
IMLKLKVTIF RVLEDAGPGN HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-3331743429144B3 domain-containing transcription factor VRN1
4i1k_B3e-3331743429144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891221.10.0B3 domain-containing transcription factor VRN1-like
SwissprotQ8L3W12e-31VRN1_ARATH; B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-33B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]