PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 394aa    MW: 45040.4 Da    PI: 8.8667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.8e-11361171094
                                                           HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                                                    B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                                                           v+++++l lp  f++++g +       t++ ++g +W++ l  +k  +++++++GW 
  augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1  36 VFNEKILKLPEIFLQKFGDQ--LASIATVNGPNGLVWQLSL--EKDENGTWFSDGWD 88 
                                                           578899********999877..44589999***********..************** PP

                                                           HHHHHHT--.TT-EEEEEE-SSSEE..EE CS
                                                    B3  67 eFvkangLk.egDfvvFkldgrsefelvv 94 
                                                           +F + + ++  g +++Fk++g+s+f+ ++
  augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1  89 KFLDYHSINsNGHVLIFKYEGNSTFNVLF 117
                                                           *********89**********99997665 PP
2B351.91.4e-16293388199
                                                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETT CS
                                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksg 57 
                                                           ffk+ ++ ++  ++ +++p  fa ++  + +e   + l+d++g+++  ++  r +sg
  augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1 293 FFKAILRRHNIYNSFVYVPAGFAMKYL-P-TE--SIALQDSDGKRFPARCFDREGSG 345
                                                           89999999***************9994.3.45..4***************5555555 PP

                                                           E.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                                    B3  58 r.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                           +   ++kGW  F+++++L+egD++vF+l++r++  l v++fr+
  augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1 346 AgRSIGKGWATFAREHDLEEGDVLVFELINRETIVLEVHIFRA 388
                                                           5799*************************999999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.34827121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-1328117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1231116IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.001632121IPR003340B3 DNA binding domain
CDDcd100171.13E-632117No hitNo description
PfamPF023627.4E-936118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18286388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-18287387IPR015300DNA-binding pseudobarrel domain
CDDcd100176.64E-18292387No hitNo description
SMARTSM010194.4E-14293389IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111293389IPR003340B3 DNA binding domain
PfamPF023621.9E-15293388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASRPRTRRR GVEPTDKRER RCKYPTRDPE TFFKIVFNEK ILKLPEIFLQ KFGDQLASIA  60
TVNGPNGLVW QLSLEKDENG TWFSDGWDKF LDYHSINSNG HVLIFKYEGN STFNVLFMFD  120
MTAGKIDYPI DCLSSDAEDD SVPNETEEKD FGYNDVSVST TYSPSQNSSE SWTSDEYFSQ  180
GVLKKRNKYT TWTDRKKRHV RKGACSSGQA ATQSCDKCGH HKESEFAKFG KEEAEKTPKE  240
GRFYSSGKRN PKSKYKVDDF SATSGFSKFS KTIQAAKKRA RKAADMFQSE HPFFKAILRR  300
HNIYNSFVYV PAGFAMKYLP TESIALQDSD GKRFPARCFD REGSGAGRSI GKGWATFARE  360
HDLEEGDVLV FELINRETIV LEVHIFRAID YSGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1627139125145B3 domain-containing transcription factor VRN1
4i1k_B1e-1627139125145B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182201LKKRNKYTTWTDRKKRHVRK
2183196KKRNKYTTWTDRKK
3183197KKRNKYTTWTDRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907689.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_023907691.10.0putative B3 domain-containing protein Os03g0621600 isoform X3
TrEMBLA0A2N9F0K21e-160A0A2N9F0K2_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-21B3 family protein