![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | augustus_masked-scaffold04997-abinit-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25670.6 Da PI: 5.3423 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t +eAa a++aa+ kl+g augustus_masked-scaffold04997-abinit-gene-0.10-mRNA-1 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSQEAAMAYDAAAGKLYG 89 69****999.**********8...3.35**********************98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.96E-20 | 39 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 40 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.168 | 40 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.2E-14 | 40 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-21 | 40 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-33 | 40 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MLKSGTASPE EKKQAKRSAQ ASSRKGCMRG KGGPENAMCT YKGVRQRTWG KWVAEIREPN 60 RGARLWLGTF DTSQEAAMAY DAAAGKLYGT AAKLNLPDVT LNSQHPATSI DTQINPMETH 120 PQGVHNSGIL CSSNNSPIVK VDDFTSQPYQ NDSFMSFPNG YVESNEKQKE NIVKFGENKE 180 IDGFWDNMNA NFPVFDETIW TEAAMSLDFD SGIFPGNLAD GSGWDALHSP WCM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-18 | 41 | 97 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023873527.1 | 1e-151 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A2N9IGX5 | 1e-116 | A0A2N9IGX5_FAGSY; Uncharacterized protein | ||||
STRING | Gorai.009G197800.1 | 8e-88 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-53 | ERF family protein |