PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02244-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 389aa    MW: 44030.5 Da    PI: 7.8028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02244-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.8e-1725113197
                                                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETT CS
                                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksg 57 
                                                           f+k+l++s+v+   +l+lp +f++ h   ++ ++ ++ledes ++++ k+i ++   
  augustus_masked-scaffold02244-abinit-gene-0.3-mRNA-1  25 FIKTLVRSNVTGGYWLRLPAQFCKMHL--PRHDIIVILEDESREEYKTKYIAENAA- 78 
                                                           89*********************9995..457789***************666655. PP

                                                           EEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                                                    B3  58 ryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                                              l++GW++F  a++L+e D++vF+l+g+  f+++v ++
  augustus_masked-scaffold02244-abinit-gene-0.3-mRNA-1  79 ---LSSGWRRFSIAHQLCEDDVLVFQLVGT--FKFKVYMV 113
                                                           ...***********************9985..54466554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-1918116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-2119116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-2223114No hitNo description
SMARTSM010192.1E-1725116IPR003340B3 DNA binding domain
PfamPF023628.7E-1425113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.6625116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEAKSSALKQ AMEVQASLPA EFPSFIKTLV RSNVTGGYWL RLPAQFCKMH LPRHDIIVIL  60
EDESREEYKT KYIAENAALS SGWRRFSIAH QLCEDDVLVF QLVGTFKFKV YMVRLNGLAG  120
VDGLFGPPNL DACARGNDYD KKIKIHKDAT YFDRVMQDIF GETIQINNLK DLDTTTSFGN  180
AANQYENGRK NLGSDVRCGL RLAGSIANLK EVNSISSFTI VVNGETIDSQ LSDYQRVKYY  240
DLCCSQNSFL HENLRKNINS KLAAEIISET INIVDAIRAC ELLTPLADFE GRDNTLKGFE  300
LLGMNVQFLR ARVARLMSIA MEAAAVKDPR RKSKVRLEQA HAEEEIDFLK LKLSKSKETK  360
ERLDHKIEAL KVNVVRHEIV FQEVVNAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912821.10.0B3 domain-containing protein Os01g0234100-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-36B3 family protein