PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 815aa    MW: 90436.2 Da    PI: 7.3157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18241340198
                                                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.... CS
                                                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.. 52 
                                                            f+k l++sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  
  augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1 241 FEKMLSHSDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDAKGKEWIFQFRFwp 296
                                                            89**************************555566778***************9989 PP

                                                            EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                                     B3  53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                            +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv+++++
  augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1 297 NNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGKLVMGFRK 340
                                                            999999***9.********************766.77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-31237349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-20238340IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-22239340No hitNo description
SMARTSM010191.2E-20241342IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223241342IPR003340B3 DNA binding domain
PfamPF023627.3E-16241340IPR003340B3 DNA binding domain
PROSITE profilePS5105014.223504554IPR011124Zinc finger, CW-type
PfamPF074966.5E-12509551IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MVNLPLQQVH CGCIVSSHAF TLLDPGGIEC MTCVRKNLPW TSNPAWPPPL CFHPPLQERL  60
KDLSVKNWNQ LAGSGPVPWR QAPSLFNSSI PASEQSRFPY DYDISGGINK LNANDRLSAS  120
PLEKKKIEDL SERLMNGNLK LGAREILDNG NAGIKSEENH SSCLSQQSSS LKEDPSTPQF  180
GLTAPHASPN ETNAQIGVRN GRPRVDARGR SLLLPRYWPR FTDQELQQIS GDSNSVITPL  240
FEKMLSHSDA GRIGRLVLPK KCAEAYFPPI SQPEGLPLKV QDAKGKEWIF QFRFWPNNNS  300
RMYVLEGVTP CIQSMQLQAG DIVTFSRLEP EGKLVMGFRK ASNAPPSDQD HDSNKTMNGV  360
STHGDAELAD PSSWSKVDKS GYIAKEVLGA KSSISRKKKN STLRAKSKRV RIENEDLIQL  420
KITWEEAQVL LRPSPNHLPS VVVIEGFEFE EYEDAPILGK PTIFAANNLG CELILKFKHA  480
QCVSIFGTWT DYPCLFPTLR SIYVSEKIQW VQCEDCFKWR KLPANALLPS KWTCTENSWD  540
PERSVCSAAQ ELTPEQLEDL LPHCNLDNVE ALEGLDTLAN LAILGEGETL PASSQATTKH  600
PRHRPGCSCI VCIQPPSGKG PKHKQSCTCN VCQTVKRRFR TLMMRREKKQ SEKEAETIRK  660
KQHQQQPRQL PVPEKLQDDD SLLYNNTGNS SPKQIREINE VSDDEPNKMK SSSSPFKGQI  720
DLNIQPEREE ELSPGSDSGS MMKLLQDATE RYLKQQRLSS SGGNSSANQS HPSGDVAGGE  780
KLTNIINLGS NHSDADEDHP VTLSIKASAS TPTAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-652193442127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920704e-72KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900597.10.0B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2I4E8I70.0A0A2I4E8I7_JUGRE; B3 domain-containing protein Os07g0563300-like isoform X2
STRINGXP_008224939.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-159HSI2-like 1