PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01591-abinit-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 326aa    MW: 36828.1 Da    PI: 7.9292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01591-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.51.1e-3237140199
                                                           EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EE CS
                                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrk 54 
                                                           f+kv tpsdv+k++rlv+pk++ae+h   ++ +e++  l++ed++g+ W+++++y++
  augustus_masked-scaffold01591-abinit-gene-0.7-mRNA-1  37 FDKVVTPSDVGKLNRLVIPKQHAEKHfplDSTNEKGLLLSFEDRNGKPWRFRYSYWN 93 
                                                           89***************************77788999******************** PP

                                                           ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
                                                    B3  55 ksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 
                                                           +s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l++ ++r+
  augustus_masked-scaffold01591-abinit-gene-0.7-mRNA-1  94 SSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGEsGKDRLYIDWRRR 140
                                                           *****************************665777888999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4129140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-3034130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-2835130No hitNo description
PfamPF023627.6E-3037140IPR003340B3 DNA binding domain
PROSITE profilePS5086315.08637141IPR003340B3 DNA binding domain
SMARTSM010196.8E-2437141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MELSPGNDSY DEAAEATGGG GVGVRTHHES IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE  60
KHFPLDSTNE KGLLLSFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS  120
FERGVGESGK DRLYIDWRRR PVAPNLTNNP HFDPSLRWPS RLYSPPQPSS VSRHYQHLQQ  180
MNYNIHPYQH YHHHHHHNQY HQSGTHDLYN YNAVNSGSGS SLYYLRSSGS HGDQIINGAA  240
LPQGGDIVPM AMDSVQPVVH NGKTVAKRLR LFGVNMECSI PEEPECPSVS MAPQLLRLPN  300
ATTVLPTIPF EFSNKGKSSL TFDAEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-63321413114B3 domain-containing transcription factor NGA1
5os9_B2e-63321413114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR3397782e-35KR339778.1 Jasminum sambac microsatellite Js637 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925272.10.0B3 domain-containing transcription factor NGA1 isoform X2
RefseqXP_023925273.10.0B3 domain-containing transcription factor NGA1 isoform X2
SwissprotO827993e-76NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2N9I2X61e-129A0A2N9I2X6_FAGSY; Uncharacterized protein
STRINGcassava4.1_008697m1e-106(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-69B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]