PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00371-abinit-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Trihelix

Protein Properties

Length: 452aa MW: 51222.3 Da PI: 5.5145

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00371-abinit-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.9	4.3e-21	120	216	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergfers 46 +Wt++ v++Li ++ ++++ + +kk++W+ vsk m ++g+++s augustus_masked-scaffold00371-abinit-gene-0.6-mRNA-1 120 KWTDKVVRLLIVVVACVGDDGTVEGgeghkrksgslQKKGKWKTVSKIMISKGCHVS 176 7***********9555555532112334455667***************** PP trihelix 47 pkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 p+qC++k+++lnkryk+++++ +++ +++++++ + d++ augustus_masked-scaffold00371-abinit-gene-0.6-mRNA-1 177 PQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPTLMDSM 216 ***********************569999988888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-18	118	243	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MDSSGLGGGF LSGPNGAILD LESSIHRHQQ TQLGHPLLRH QNHANVMSGL ECDHHPIGLM 60 EEKSSILKGI SMNYSKGKAV APISIPSCNN MSEEDEPSFA EDGNGDNDGG KRGSPWQRMK 120 WTDKVVRLLI VVVACVGDDG TVEGGEGHKR KSGSLQKKGK WKTVSKIMIS KGCHVSPQQC 180 EDKFNDLNKR YKRLNDILGR GTSCRVVENP TLMDSMPHLT AKAKEDVRKI LSSKHLFYKE 240 MCAYHNGQRI PNCQDLDLQG HSLPLGSCSK DNNGSDKEEA EENNDSDDDE MDNEDDINAE 300 GDGERMGEFS GRAKVSEEEG HFWSQSVELE SFEAEMAGIF QDPTKSLWER REWVKRQTLQ 360 LQEQKVSFQA QALELEKQHF KWLRYCSKKD WELERLRLEN DRMKLENERM VLLLREKELE 420 IDFRRSEASI DPTSVGIDRL QGRDQIDLGR HE

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MDSSGLGGGF LSGPNGAILD LESSIHRHQQ TQLGHPLLRH QNHANVMSGL ECDHHPIGLM  60
EEKSSILKGI SMNYSKGKAV APISIPSCNN MSEEDEPSFA EDGNGDNDGG KRGSPWQRMK  120
WTDKVVRLLI VVVACVGDDG TVEGGEGHKR KSGSLQKKGK WKTVSKIMIS KGCHVSPQQC  180
EDKFNDLNKR YKRLNDILGR GTSCRVVENP TLMDSMPHLT AKAKEDVRKI LSSKHLFYKE  240
MCAYHNGQRI PNCQDLDLQG HSLPLGSCSK DNNGSDKEEA EENNDSDDDE MDNEDDINAE  300
GDGERMGEFS GRAKVSEEEG HFWSQSVELE SFEAEMAGIF QDPTKSLWER REWVKRQTLQ  360
LQEQKVSFQA QALELEKQHF KWLRYCSKKD WELERLRLEN DRMKLENERM VLLLREKELE  420
IDFRRSEASI DPTSVGIDRL QGRDQIDLGR HE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023907392.1	0.0	uncharacterized protein LOC112019099
TrEMBL	A0A2N9HYU7	0.0	A0A2N9HYU7_FAGSY; Uncharacterized protein
STRING	cassava4.1_007480m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10546	32	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-83	sequence-specific DNA binding transcription factors