PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 362aa    MW: 40998 Da    PI: 10.3277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.4e-15941612899
                                                           --..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                                                    B3  28 gkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                                           ++  e+    l+ ++g +Wev+l  +k+ g+++l+kGW+eF++   Lk+g fvvF++
  augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1  94 SSRSEDHLAFLTLPNGAKWEVEL--TKHNGEVWLQKGWREFAEYYSLKQGHFVVFRY 148
                                                           34445556677779*********..******************************** PP

                                                           -SSSEE..EEEEE-S CS
                                                    B3  85 dgrsefelvvkvfrk 99 
                                                           +++s f  +v +f+ 
  augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1 149 EENSHF--HVLIFDP 161
                                                           999999..**99986 PP
2B340.26.3e-132743511190
                                                           HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHH CS
                                                    B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWk 66 
                                                            +   l++p +f++++ +++ +   ++l+   ++ +  + ++ +k++g+  ++ GW 
  augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1 274 VNAWYLSIPVHFTKKNYIQSGQR--VILKVgNQSCEVLFSISGEKRPGS--FSVGWA 326
                                                           555569**********7775554..555442444555555544666666..899*** PP

                                                           HHHHHHT--TT-EEEEEE-SS.SEE CS
                                                    B3  67 eFvkangLkegDfvvFkldgr.sef 90 
                                                            F++ n+L++gD++vF+l++r +++
  augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1 327 TFARKNRLQVGDVCVFELIKRnNNG 351
                                                           *******************885666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.2E-885162IPR003340B3 DNA binding domain
PfamPF023622.6E-1295160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-2097173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-1898169IPR015300DNA-binding pseudobarrel domain
CDDcd100177.35E-15104160No hitNo description
PROSITE profilePS5086312.534104162IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-18258353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-19258361IPR015300DNA-binding pseudobarrel domain
CDDcd100178.63E-16263361No hitNo description
PROSITE profilePS508639.573264362IPR003340B3 DNA binding domain
SMARTSM010199.3E-4265358IPR003340B3 DNA binding domain
PfamPF023625.7E-11269351IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEPWWPVKQK IVLAIKAKNG GVFSRHDAQP RAPAPAVKAP KFYPADDVKK PLVNKRKPKP  60
TKLSQVTEAA VQIGAGLCLR SVHLCSRSVA SSSSSRSEDH LAFLTLPNGA KWEVELTKHN  120
GEVWLQKGWR EFAEYYSLKQ GHFVVFRYEE NSHFHVLIFD PSATEIDYPS KSSNGHEEDQ  180
CDEDTDESDT FIQTLPNSCP LRPKRRDTSL LPSHRPRKKM KTTCTSGRIE SQKSKVNART  240
RQLTRIEKAK ALKKASGFKS ENPHFMVVMQ LSFVNAWYLS IPVHFTKKNY IQSGQRVILK  300
VGNQSCEVLF SISGEKRPGS FSVGWATFAR KNRLQVGDVC VFELIKRNNN GVVLLEVSIF  360
RD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888780.11e-142B3 domain-containing transcription factor VRN1-like
RefseqXP_023888781.11e-142B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2I4FEY62e-58A0A2I4FEY6_JUGRE; B3 domain-containing transcription factor VRN1-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein