PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026413P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 411aa    MW: 47695.7 Da    PI: 4.5266
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026413P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.77.4e-33161072102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkkly++++d++++++isw+++++sf +ld ++f+ ++LpkyFkhsnf+SF+RQLn+YgF+k++++          weF+ + F kg+k+ll++
  MELO3C026413P1  16 FLKKLYDMVDDDSTNSIISWTSSNDSFTILDITQFSLHLLPKYFKHSNFSSFMRQLNIYGFRKIDTDC---------WEFATDGFVKGQKHLLKS 101
                     9***************************************************************9987.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k+
  MELO3C026413P1 102 IYRRKN 107
                     ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-346100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-3211105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5112105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2816105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MVKSAADRQG SSVAPFLKKL YDMVDDDSTN SIISWTSSND SFTILDITQF SLHLLPKYFK  60
HSNFSSFMRQ LNIYGFRKID TDCWEFATDG FVKGQKHLLK SIYRRKNIQG TDQRKALQPR  120
DNSEGQVELP DYSGLWKEVE NLKIDKNAVM QELVKLKQHQ ETSENKLLLL RERLQGMEKN  180
QQQMLSFLVM AVQSPGFLVQ FLQPKEKSWR MADPSNMLEQ ISDDNQVPSN GMIVRYQRPL  240
DELSTTLLPP VTGPGKQQES EPFPDGMKDF FLNSDFMKVL MDEKVCLDNH SQFVLPDVQD  300
VAWEQLLLAN PFSGNSENGR KVDHERRYTD SEDDELDMET IDTQTHEENS QDFELLIRQM  360
EKCEDFEIQT RLDESYIENS NDVHLLTQQM DLLASDREIL YETPDKMRTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-221110524129Heat shock factor protein 1
5d5v_B4e-221110524129Heat shock factor protein 1
5d5v_D4e-221110524129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819070.0LN681907.1 Cucumis melo genomic scaffold, anchoredscaffold00093.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464693.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLA0A1S3CMJ80.0A0A1S3CMJ8_CUCME; heat stress transcription factor A-8
STRINGXP_008464693.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-89heat shock transcription factor A8