PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C022983P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 126aa MW: 14002.5 Da PI: 6.5467

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C022983P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.3	1e-19	16	67	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd s + +r++lg+f taeeAa+a+++a+ ++g+ MELO3C022983P1 16 RYRGVRRRP-WGKFAAEIRDSSR---HgARIWLGTFNTAEEAARAYDRAAYMMRGH 67 6******.******432...25***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.85E-18	16	75	No hit	No description
PROSITE profile	PS51032	23.63	16	74	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-15	16	67	IPR001471	AP2/ERF domain
SMART	SM00380	9.3E-36	16	80	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-24	16	75	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.0E-31	16	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-12	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-12	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MDEEGKSSND QGGEVRYRGV RRRPWGKFAA EIRDSSRHGA RIWLGTFNTA EEAARAYDRA 60 AYMMRGHLAV LNFPNEYPSL GGSSSASSSS SSAAAPRVQG QVIELEYLDD KVLEELLEYE 120 EKRKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-35	1	112	1	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681844	0.0	LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008460635.1	3e-87	PREDICTED: ethylene-responsive transcription factor ERF098
Swissprot	Q9LTC5	4e-43	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1S3CCW3	8e-86	A0A1S3CCW3_CUCME; ethylene-responsive transcription factor ERF098
STRING	XP_008460635.1	1e-86	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-19	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]