PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022179P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 162aa    MW: 18299.7 Da    PI: 7.2333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022179P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18453255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  MELO3C022179P1  4 NYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYHLPEMAAAAYDVAALHLRG 53
                    69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-12353IPR001471AP2/ERF domain
CDDcd000182.15E-21363No hitNo description
PROSITE profilePS5103222.708461IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-31462IPR001471AP2/ERF domain
SMARTSM003801.4E-34467IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22462IPR016177DNA-binding domain
PRINTSPR003674.6E-13516IPR001471AP2/ERF domain
PRINTSPR003674.6E-134363IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDPNYRGVRK RKWGKWVSEI REPGKKTRIW LGSYHLPEMA AAAYDVAALH LRGPDARLNF  60
PDLADSFPRP ASSSPDHIQA AAHMAALRFA NTCKPPEPPA PVRVGLSPSQ IQAINESPLD  120
SPTMWMQMAA EALSLQPREW DDEYNYNNNN MQLHHHSIWD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-15561663ATERF1
3gcc_A5e-15561663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459595.11e-117PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I27e-48ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1S3CAN71e-116A0A1S3CAN7_CUCME; ethylene-responsive transcription factor ERF022-like
STRINGXP_008459595.11e-116(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-48ERF family protein