PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022010P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 398aa    MW: 44686.3 Da    PI: 4.3418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022010P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-194998255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  MELO3C022010P1 49 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 98
                    789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-3148105No hitNo description
SuperFamilySSF541713.47E-1949106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-2749105IPR001471AP2/ERF domain
PfamPF008479.9E-144998IPR001471AP2/ERF domain
SMARTSM003801.4E-3549112IPR001471AP2/ERF domain
PROSITE profilePS5103219.59949106IPR001471AP2/ERF domain
PRINTSPR003675.7E-85061IPR001471AP2/ERF domain
PRINTSPR003675.7E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MARKRKAVEG VEADKSSSEG GALGWDEMVK EATATAAALS GGARRARKRF VGVRQRPSGR  60
WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGSN TRTNFWPCSP LSSSSPALPS  120
KITNLLIQRL NARNNNSSIH NLPINQQEQK HQPVQERMLN SIDHQSREEL TTTCFTDRVL  180
NDLLNDQEVF TTNPNIEEIS RSFESCLTEK DESDSGEMES SNWVGMTQMN NSNGGDEKNE  240
LVQEEEEEDQ EEGSNVLDFH FLDDIGPPCY YSPFEIAEEI GEPMEGGEGN EDEPSSMLRE  300
AMKRMKYERK ISASLYAFNG IPECLKLKLG EGSGVRSNSE LITSLRKACD RRRSNEEKVE  360
EEEEDEEDKE EMKSFSSNEV DLSIWSSLDL PPICFVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459348.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
TrEMBLA0A1S3CA150.0A0A1S3CA15_CUCME; dehydration-responsive element-binding protein 2F-like
STRINGXP_008459348.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-22related to AP2 11