PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020448P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 407aa    MW: 44725.8 Da    PI: 6.8047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020448P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18236285356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++GVr+++ +g+WvAeIr p++   r+r++lg+f+ta eAa a++ a+  l+ge
  MELO3C020448P1 236 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAVEAAVAYDTAAYMLRGE 285
                     8******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.64E-31234294No hitNo description
PROSITE profilePS5103221.614235292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-30235294IPR001471AP2/ERF domain
SMARTSM003802.9E-34235298IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-22235293IPR016177DNA-binding domain
PRINTSPR003678.6E-10236247IPR001471AP2/ERF domain
PfamPF008471.2E-11236285IPR001471AP2/ERF domain
PRINTSPR003678.6E-10258274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEDQFPFIEQ QKPIIQKDFS SSSLQQFVSG SYFYGDPTLW GSILRPPRSE NGGFNGNIDQ  60
SKSPSSSSSS SSSNSPNSPT SPSPTSSSLF STEKSEISGG NLIDSIHGIE SNLHPNGESF  120
VPLNFLETFP KQESESLSPS PPLFQSQIDS TNLTLFLQEP TIVDPSPQNP FQIQAQTGLQ  180
WLKNSQNQNR SAAIIAAASG NYSDFWLGVT KTQPMKQIGR KQGNQKTESS AVGKLFRGVR  240
QRHWGKWVAE IRLPRNRTRV WLGTFDTAVE AAVAYDTAAY MLRGEFAHLN FPDQKHRLKS  300
NSLNRTTAAL LEAKLQAITQ GNSGRKKRIA ATVSTIDSCE KGLMEGDSKV LDLRKKASEN  360
VCGGSETGEM KRNEDGNLEI EQHVQLSRMP SLDMDMIWDA LLVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-19231292163ATERF1
3gcc_A7e-19231292163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818450.0LN681845.1 Cucumis melo genomic scaffold, anchoredscaffold00043.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457242.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A1S3C5190.0A0A1S3C519_CUCME; ethylene-responsive transcription factor ERF062
STRINGXP_008457242.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-58ERF family protein