PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018744P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 398aa    MW: 44575.8 Da    PI: 6.1928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018744P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19199249256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  MELO3C018744P1 199 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 249
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-34198257No hitNo description
Gene3DG3DSA:3.30.730.104.2E-32199257IPR001471AP2/ERF domain
SMARTSM003806.9E-38199262IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-23199258IPR016177DNA-binding domain
PROSITE profilePS5103222.998199256IPR001471AP2/ERF domain
PfamPF008472.2E-12200249IPR001471AP2/ERF domain
PRINTSPR003676.4E-11200211IPR001471AP2/ERF domain
PRINTSPR003676.4E-11222238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAAEDKRTGK LKMVIDAKNP EKKIEKGKNV AAVSLERQQW KPVLDDAFLS RRPLKKICSS  60
NFHNPFLHSP VSLSPPSSKI QFPFDFEASQ QSSITTTTTT QFNSQHPISS SSSSSSPFTS  120
FGSPEQQMIS FSSNQQQGFG FPPYFVNGDP VASQQRLFKY CSDAFHLSPR GRAMMMSRFG  180
PDGGNLFRPP LQPISATKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEDAAMAYD  240
REAFKLRGEN ARLNFPDRFI KKDIPKTEAE TELTIPITEE AHPESVIVLQ PPEEEKPNND  300
LTESGSCASE QTEMVWGEME EAWFNAIPAG WGPGSAVWDN LDPTNNLVLQ SQIPFGSSNE  360
HQMNESNDNQ NKIETSESAS SSSTSAPMKL FLWKDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21198258162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455331.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLA0A1S3C0860.0A0A1S3C086_CUCME; ethylene-responsive transcription factor ERF054
STRINGXP_008455331.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-55ERF family protein