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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C017645P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22243.1 Da PI: 8.2364 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 107 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp+ r++lg++++ +Aaka++ a+ +l+g MELO3C017645P1 107 HFRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTYDSDIDAAKAYDCAAFRLRG 157 69*******.**********8542..4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.0E-30 | 106 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-21 | 107 | 167 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.815 | 107 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-12 | 107 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-33 | 107 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-12 | 108 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.16E-21 | 115 | 165 | No hit | No description |
PRINTS | PR00367 | 1.2E-12 | 147 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDSSDEFLTI EFITQFLLGD FSDHQTHFPT DSPFLHPIKL EDFFFDSPIP PLPPPPEISD 60 NDTKKPGKVV DQSTTPDPDM STQACGAELA AKVSVVEASG GKAGRRHFRG VRRRPWGKFA 120 AEIRDPTRKG SRVWLGTYDS DIDAAKAYDC AAFRLRGRKA ILNFPLEAGE PDPPTAADRK 180 RGRGQKWRNI SKALMATNEK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-26 | 106 | 166 | 4 | 64 | ATERF1 |
3gcc_A | 4e-26 | 106 | 166 | 4 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 0.0 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453871.1 | 1e-146 | PREDICTED: ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A1S3BX96 | 1e-144 | A0A1S3BX96_CUCME; ethylene-responsive transcription factor ERF106 | ||||
STRING | XP_008453871.1 | 1e-145 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 3e-33 | ERF family protein |