PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016927P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 193aa    MW: 21656.4 Da    PI: 4.2745
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016927P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-192373155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGVr++k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  MELO3C016927P1 23 SKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDKPEKAARAFDAAQFCLRG 73
                    89*****998.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-212383IPR016177DNA-binding domain
PfamPF008471.8E-122373IPR001471AP2/ERF domain
CDDcd000182.03E-282383No hitNo description
SMARTSM003801.3E-312487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-292483IPR001471AP2/ERF domain
PROSITE profilePS5103221.6012481IPR001471AP2/ERF domain
PRINTSPR003671.4E-82536IPR001471AP2/ERF domain
PRINTSPR003671.4E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MADRLNSTTT EQPNDNSSAD QTSKYKGVRR RKWGKWVSEI RLPNSRDRIW LGSYDKPEKA  60
ARAFDAAQFC LRGPQAKFNF PDSPPEIDGG DRLSAQEIQA AAAKYAEEHG EEGVGNDHDE  120
ALVTVEGGGV WPDWDMTMDG GWEFGFGGNA MIYDGNISFE VQENMEEKED FDNNGGDHFC  180
HEPNFLWNFD NH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1424811472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452799.11e-142PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC24e-44ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1S3BVW61e-141A0A1S3BVW6_CUCME; ethylene-responsive transcription factor ERF017-like
STRINGXP_008452799.11e-142(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]