PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C016260P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 807aa MW: 88859.6 Da PI: 5.8381

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C016260P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.6e-29	403	454	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ MELO3C016260P1 403 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 454 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.871	393	474	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-26	407	454	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.64E-23	705	793	No hit	No description
SMART	SM00666	1.2E-25	711	793	IPR000270	PB1 domain
PROSITE profile	PS51745	26.011	711	793	IPR000270	PB1 domain
Pfam	PF00564	5.8E-19	712	792	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.7E-26	712	792	No hit	No description
CDD	cd06407	5.43E-38	712	792	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MASLTFMFSL DADQDGYLGL PGRVFQQKLP EWTPNVQYYS SKEYPRLSHA LNYNVQGTLA 60 LPVFDPSGHS CLGVLELIMT SPKINYAPEV DKVCKALEAV NLKSSEILDH PNNQICNEGR 120 QNALAEILEV LTVVCETHNL PLAQTWVPCR HRNVLAYGGG LKKSCTSFDG SCMGRICMSA 180 TEVASYVVDA HMWGFRDACL EHHLQKGQGV SGRAFLSHSS CFCGDITQFC KTEYPLVHYA 240 LMFGLKSCFS ICLRSTFTGD DEYILEFFLP PSIVDYQEQK NLLGALMATM KKHFYTLKVA 300 SGINLEDKEG FVEIIQASRN GGFDSRLEYI QIPQPVELPP ASDAMPKAVE VAALETLQQQ 360 SLMVHDAPKD ENNGAWDGES HKPVPCPQNK EVKKTSERKR GKAEKSISLE VLQQYFAGSL 420 KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG AEGAFGISSL 480 ATSPLPVTVS SSSHPLTPEG SNQQNFVASQ PSDSQYKETN TSEAQTNDTQ ARLEDQLHRG 540 VLSPEEPIHE QNGFLPKFGN GLNNFRTGSG SREESAGTPT SHGSCQGSPA NDSALANNPI 600 SIPQHEQCVR RESPEVAFHP IDKLNVSAPA CSIPDTLVMV EPEEPFGGML IEDAGSSKDL 660 KNLCASVADA VLDEPVPEFC WSNHHDIALR QPMDSICHTV PHISLRQEPR RMTIKATYKE 720 DIIRFRIPLS SGIVELREEV AKRLKLEVGT FDIKYIDDDR EWVLIACDAD LQECVDISKS 780 SGSNIIRLSV HDLNVNLGSS CESTGE*

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MASLTFMFSL DADQDGYLGL PGRVFQQKLP EWTPNVQYYS SKEYPRLSHA LNYNVQGTLA  60
LPVFDPSGHS CLGVLELIMT SPKINYAPEV DKVCKALEAV NLKSSEILDH PNNQICNEGR  120
QNALAEILEV LTVVCETHNL PLAQTWVPCR HRNVLAYGGG LKKSCTSFDG SCMGRICMSA  180
TEVASYVVDA HMWGFRDACL EHHLQKGQGV SGRAFLSHSS CFCGDITQFC KTEYPLVHYA  240
LMFGLKSCFS ICLRSTFTGD DEYILEFFLP PSIVDYQEQK NLLGALMATM KKHFYTLKVA  300
SGINLEDKEG FVEIIQASRN GGFDSRLEYI QIPQPVELPP ASDAMPKAVE VAALETLQQQ  360
SLMVHDAPKD ENNGAWDGES HKPVPCPQNK EVKKTSERKR GKAEKSISLE VLQQYFAGSL  420
KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG AEGAFGISSL  480
ATSPLPVTVS SSSHPLTPEG SNQQNFVASQ PSDSQYKETN TSEAQTNDTQ ARLEDQLHRG  540
VLSPEEPIHE QNGFLPKFGN GLNNFRTGSG SREESAGTPT SHGSCQGSPA NDSALANNPI  600
SIPQHEQCVR RESPEVAFHP IDKLNVSAPA CSIPDTLVMV EPEEPFGGML IEDAGSSKDL  660
KNLCASVADA VLDEPVPEFC WSNHHDIALR QPMDSICHTV PHISLRQEPR RMTIKATYKE  720
DIIRFRIPLS SGIVELREEV AKRLKLEVGT FDIKYIDDDR EWVLIACDAD LQECVDISKS  780
SGSNIIRLSV HDLNVNLGSS CESTGE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451916.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein NLP7-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3BSP0	0.0	A0A1S3BSP0_CUCME; LOW QUALITY PROTEIN: protein NLP7-like
STRING	XP_008451916.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]