PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013904P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 566aa    MW: 63040.7 Da    PI: 6.5683
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013904P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.8e-124067835
            GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    +TplWR+gp  ++ LCnaCG ++r kg+
  MELO3C013904P2 40 STPLWRNGPPDKPVLCNACGSRWRTKGT 67
                    6********55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00183481IPR000679Zinc finger, GATA-type
CDDcd002029.76E-113977No hitNo description
SuperFamilySSF577163.18E-64071No hitNo description
PfamPF003201.0E-94067IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-84067IPR013088Zinc finger, NHR/GATA-type
PfamPF139196.7E-10311396IPR028020ASX homology domain
PfamPF165508.9E-9326392IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MHPYPPGLPH VLEFIFHLHN PQRVEVVTIL LIAASKDFPS TPLWRNGPPD KPVLCNACGS  60
RWRTKGTLAN YTPLHARADP DEFEDKRISR WKNLSMCKNK EVKLLKRKQY QDNGLVVGVI  120
PDHAQSFHKV VDEDTSNRSS SGSAISNSES CAQFGGADAS DLTGPSQSTA WEAMVPSRKR  180
TCVGRPKSTA VEKLTKDLYT ILREQQSYFS GSSEEDLLFE NETPMVSVEI GHGSVLMRHP  240
SSIAREEESE ASSISVDNKQ FSLNEVHSES SILPVHYEAQ NTFVNFSTLG IGRKHSTGQG  300
FLNEQIKRDR PQSERMQALG NRNSPLCNID LTDILNFREF TKQLTSENQQ ELMKYLPSVD  360
TEELPDSLNS MFESPQFKEN LNSFKQLLTE GVFDFSFPGA KREDCKILSR LVLLDLSKSK  420
WVEQYNLLKK CSSGESVQGF AAASSSLTNG KRVLDGQNKK LSETRTTMKS PKRVMTKTST  480
ESKELVDSDG SCFSPRSLFA LPSDGGSFTL EALHFDEDSS DQDLLLDVRS NSSFPQAELL  540
HPALSFVAQQ ASNSSSSVNL RLMHR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448782.10.0PREDICTED: GATA transcription factor 26-like isoform X1
SwissprotQ8W4H11e-142GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1S3BL500.0A0A1S3BL50_CUCME; GATA transcription factor 26-like isoform X1
STRINGXP_008448782.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-140GATA transcription factor 26